Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1646 ATGTTCTTCTGCAAAATGGCCCCTACTTCACTTGCTTCCCGCTTCCAACAATCCATCACCCCGACCGCGCTCCGATCCTACGCCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCCGTTGTCGGATCATCCATGGCGTCCCGAAAGCTGATGTCTGGTGCTGCAGCGACAGACCCATTGAGTCTTCTGGTGGCCGCGGTCGTCAATGCCTTCGCTTTAGCGTCGGCGGTTTACATCGCCGCCAACATCTCCGGCGGACATGTCAACCCGGCAGTGACGTTCGGCATGGCTGTCGGTGGCCATGTCAGTGTTCCTACTGCTCTCTTCTACTGGTTCGCTCAAATGCTTGCCTCCGTCATGGCCTGCATTGTTCTAAGAGTCACCATTGTCGGACAGCGCGTCTCGAGCTATGCCATTGCTGAGGAGATGACTGGCTTTGGAGCGTCGGTAGTGGAAGGCATATTGACGTTTGCTCTAGTCTACACCGTTTTCGCCGCCAGCGACCCTAGAAGAGGTCCATGCAATGCGATCGGCGCCGTGATGATCGGGCTGATGGCCGGAGCCAATGTGCTGGCTGCCGGGCCGTTCTCCGGCGGGTCGGTGAACCCGGCATGCGCGTTCGGGTCGGCGATCGTAGCCGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTCTTGCCGGAATTGTTCATGATAACGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGGGGTGTAA 783 57.09 MFFCKMAPTSLASRFQQSITPTALRSYAAEFISTFFYVFSVVGSSMASRKLMSGAAATDPLSLLVAAVVNAFALASAVYIAANISGGHVNPAVTFGMAVGGHVSVPTALFYWFAQMLASVMACIVLRVTIVGQRVSSYAIAEEMTGFGASVVEGILTFALVYTVFAASDPRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVGV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29522738 29523806 - Lag0032284.1 Lac11g1646 587504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1646 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Lac11g1646 260 FunFam Probable aquaporin TIP5-1 9 250 - -
Lac11g1646 260 Pfam Major intrinsic protein 21 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 SUPERFAMILY Aquaporin-like 18 246 IPR023271 -
Lac11g1646 260 Gene3D Glycerol uptake facilitator protein. 10 251 IPR023271 -
Lac11g1646 260 PANTHER AQUAPORIN-8 15 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1646 260 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1646 Lac-Chr11:29522738 Lac11g2291 Lac-Chr11:38983589 3.10E-54 dispersed
Lac11g1646 Lac-Chr11:29522738 Lac4g2901 Lac-Chr4:47447596 1.20E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1646 K09873 - csv:101214078 447.203