Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1712 ATGGCTTCCTACAAAGCATTAGCCTATATTCTACTCGCCACCACGCTGATCGCCGCCGGGCCAGCAGCGGCGCAGCTGAGCCCGACGTTCTACGACACCACATGCCCCAGCGTGTCCTCCATCGTAGAGGACGTAGTGAGACAAGCTCTCCAAACCGATGCCCGAGCAGGCGCCAAACTCATCCGTTTTCACTTCCACGATTGCTTTGTCAACGGGTGCGACGGGTCGGTTCTACTAGAAGATTCAGCTGTAGACGGTATAGACAGTGAGCAAAACGCACCGGGAAATGCTGGGATACAAGGCCAAGACATAGTCGCCAACATCAAAACTGCTGTTGAAAATGCTTGTCCAAACCTCGTCTCATGTGCTGACATCTTGGCCATTGCATCTAATGCGGCTGTCGTCTTGGCTGGAGGAAGGGGTTGGGAGGTTCAGTTGGGAAGAAGAGACAGCAGAGTAGCAAATAGATCTGGAGCTGCTAGTAACCTTCCAAGTCCTTTTGAGCCTCTTCAAAATCTTACTGTCAAGTTTGCTAATGTCGGTCTCGATTCCACTGATCTCGTCGCTTTATCTGGAGCGCACACGTTCGGACGTTCAAGGTGCTTGTTCTTCGTGGGGCGACTGAGAAACTTCAACGGAACGGGAATGCCCGACCCGACACTTGACCCAGTCTACAGAGACATCCTTATCGAGGCCTGCCCCGACAACCAGACTCGGGTGGATCTGGATCCGACAACTCCAGACCAATTCGACAACAACTACTTCAGCAATCTCCAAGGAAACCGTGGGCTTCTCACGAGCGACCAGGTGCTTTTCACCACTCCCGGCGCTGCCACCATCGACACTGTGAACCGCTTCGCCGCCAGCCCAGATGCCTTCTCCGATGCCTTTGGAGCCTCCATGATCAAGATGGGGAACATCAGCCCTTTGACCGGAATTGATGGCGAGATTCGCTTCACTTGCTCTCGAATTAATCCTCTGCCTGCTCTTGCTGATATCTAA 1002 53.19 MASYKALAYILLATTLIAAGPAAAQLSPTFYDTTCPSVSSIVEDVVRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLEDSAVDGIDSEQNAPGNAGIQGQDIVANIKTAVENACPNLVSCADILAIASNAAVVLAGGRGWEVQLGRRDSRVANRSGAASNLPSPFEPLQNLTVKFANVGLDSTDLVALSGAHTFGRSRCLFFVGRLRNFNGTGMPDPTLDPVYRDILIEACPDNQTRVDLDPTTPDQFDNNYFSNLQGNRGLLTSDQVLFTTPGAATIDTVNRFAASPDAFSDAFGASMIKMGNISPLTGIDGEIRFTCSRINPLPALADI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31035587 31038220 - Lag0032350.1 Lac11g1712 587570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1712 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lac11g1712 333 FunFam Peroxidase 164 304 - -
Lac11g1712 333 FunFam Peroxidase 29 175 - -
Lac11g1712 333 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 Gene3D - 30 325 - -
Lac11g1712 333 Pfam Peroxidase 42 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac11g1712 333 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 Gene3D Peroxidase, domain 2 164 304 - -
Lac11g1712 333 PANTHER PEROXIDASE 72-RELATED 14 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g1712 333 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1712 Lac-Chr11:31035587 Lac9g2882 Lac-Chr9:46745675 1.30E-121 dispersed
Lac1g0109 Lac-Chr1:1998962 Lac11g1712 Lac-Chr11:31035587 7.50E-45 wgd
Lac11g1712 Lac-Chr11:31035587 Lac9g1086 Lac-Chr9:25580087 3.60E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1712 K00430 - csv:101215530 524.242