Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g1717 | ATGGCTCAAAAGCTCCATTTTTCAATCCTTTTCATTTCTCTGTCCATTTTATCATGGATCTCCCCATCGTTTTCAAGCAACTACAATGCCATAGATTTATGGTGCAGCCGAACCCCATATCCCGAAGAGTGCAAGCACTTCTTCAAGAACGGGAAATTCAACCCGAAAAAGCTGTCAGAGTTCAAGAAATCGGCGCTGAAAATCGCCATGGAAAGAGCTCTAACAGCTGAAACAGTGACAAAGCAACTGGGCCACAAATGCCGAAGCCAGAAAGAGAAAGCCGCATGGGCCGACTGTCTGGAGCTCTACCAGAACACAATCCTCCAACTCAACAGAACCTTCTCCGACCGATGCTCCGATTTCGACATCCAAACGTGGCTCAGCTCGGCGTTGACTAACCTCGAGACGTGCCGTGCTGGGTTCGTTGACCTGAACGTCAAGGACTACGACGCCGTTTTCCCCATTCTGGCGAGGAACAACGTGACGAAGCTCATCAGCAACAGTTTGGCGATGAATAACTGCACGGAGACGGAGACGGAGTACTCGGGGTACAGTGGCGGGTTTCCCAAGTGGGTTCGGGCGGGTGAGCGGCGGCTGCTGCAGGCGGCGGCGCCCAAGGCGAACTTGGTGGTGGCGCAGGATGGGTCGGGGAATTTTAGGACGGTTCAGGCGGCGGTGGACGCGGCGGCGAAGAGGAGTGGGAGTGGGAGGTTTGTTATACATATAAAGAGAGGGGTTTACAAGGAGAATGTTGTGATTGGGAATAAAGTGAAGAATTTGATGCTTGTTGGGGATGGATTGAGGTATACTATTATTACTGGAAGTAGAAGTGTTGGTGGTGGTTCCACAACTTTCAACTCTGCTACTGTTGCTGTGACTGGGGAAGGTTTCATTGCCCGTGGCATCACATTCCGCAACACCGCTGGACCCCAAAACCACCAAGCGGTAGCCCTCCGGTCGGGCTCCGATCTCTCTGTCTTCTACCAGTGCGGCTTCGAGGGATATCAAGACACTCTCTACGTCCATTCGCAAAGACAATTCTACAGAGAATGCTACATTTACGGTACCGTCGATTTCATCTTCGGCAACGCCGCCGTGGTCTTGCAAAACTGTATGATCTACGCAAGAAAACCCATCCCCGGCCAGCAATGCGTCGTCACCGCCCAAGGCCGGACCGACCCGAACCAGAACACCGGGATCTCGATCCACAACTCGAGAGTGATGGCCGCGGCCGACCTGAAGCCGGTGCTAAGCTCGGTGAGAACCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGCACGGTTTACTTGCAAAGCTTCATGGATAGCTTGGTGAACCCTGCAGGGTGGTTGGAATGGAGTGGGAATTTTGCACTGAATACATTGTATTATGGAGAGTACAAGAATTTTGGGCCTGGTTCTTCTACTGCAAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGTCACAGAAGCATCAAAGTTTACTGTTGGGAATTTTATTGCTGGGAAGTCATGGCTACCTGCCACTGGAGTGCCATTCAATGCTGGCCTCTGA | 1563 | 51.7 | MAQKLHFSILFISLSILSWISPSFSSNYNAIDLWCSRTPYPEECKHFFKNGKFNPKKLSEFKKSALKIAMERALTAETVTKQLGHKCRSQKEKAAWADCLELYQNTILQLNRTFSDRCSDFDIQTWLSSALTNLETCRAGFVDLNVKDYDAVFPILARNNVTKLISNSLAMNNCTETETEYSGYSGGFPKWVRAGERRLLQAAAPKANLVVAQDGSGNFRTVQAAVDAAAKRSGSGRFVIHIKRGVYKENVVIGNKVKNLMLVGDGLRYTIITGSRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYQCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAAADLKPVLSSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWSGNFALNTLYYGEYKNFGPGSSTARRVKWKGYRVITSVTEASKFTVGNFIAGKSWLPATGVPFNAGL | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31201364 | 31203985 | + | Lag0032355.1 | Lac11g1717 | 587575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g1717 | 520 | SUPERFAMILY | Pectin lyase-like | 203 | 519 | IPR011050 | - | |
| Lac11g1717 | 520 | PANTHER | PECTINESTERASE | 7 | 511 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Lac11g1717 | 520 | NCBIfam | pectinesterase inhibitor domain | 7 | 173 | IPR006501 | GO:0004857(InterPro) | |
| Lac11g1717 | 520 | FunFam | Pectinesterase | 202 | 520 | - | - | |
| Lac11g1717 | 520 | Pfam | Plant invertase/pectin methylesterase inhibitor | 30 | 171 | IPR006501 | GO:0004857(InterPro) | |
| Lac11g1717 | 520 | ProSitePatterns | Pectinesterase signature 1. | 234 | 253 | IPR018040 | - | |
| Lac11g1717 | 520 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 26 | 174 | IPR035513 | - | |
| Lac11g1717 | 520 | SMART | PMEI_2 | 26 | 171 | IPR006501 | GO:0004857(InterPro) | |
| Lac11g1717 | 520 | Pfam | Pectinesterase | 208 | 505 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Lac11g1717 | 520 | CDD | PMEI-like_3 | 33 | 173 | - | - | |
| Lac11g1717 | 520 | ProSitePatterns | Pectinesterase signature 2. | 353 | 362 | IPR033131 | - | |
| Lac11g1717 | 520 | Gene3D | - | 202 | 520 | IPR012334 | - | |
| Lac11g1717 | 520 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 29 | 174 | IPR035513 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1717 | Lac-Chr11:31201364 | Lac5g2829 | Lac-Chr5:46668782 | 3.80E-213 | dispersed | |
| Lac10g2954 | Lac-Chr10:44140940 | Lac11g1717 | Lac-Chr11:31201364 | 3.40E-39 | transposed | |
| Lac11g2284 | Lac-Chr11:38916533 | Lac11g1717 | Lac-Chr11:31201364 | 2.20E-39 | transposed | |
| Lac1g3230 | Lac-Chr1:52275564 | Lac11g1717 | Lac-Chr11:31201364 | 1.10E-122 | transposed | |
| Lac3g0967 | Lac-Chr3:7861680 | Lac11g1717 | Lac-Chr11:31201364 | 6.20E-35 | transposed | |
| Lac3g1116 | Lac-Chr3:9216998 | Lac11g1717 | Lac-Chr11:31201364 | 1.30E-43 | transposed | |
| Lac8g1609 | Lac-Chr8:33968880 | Lac11g1717 | Lac-Chr11:31201364 | 7.50E-137 | transposed | |
| Lac8g2709 | Lac-Chr8:44550375 | Lac11g1717 | Lac-Chr11:31201364 | 6.90E-48 | transposed | |
| Lac9g1689 | Lac-Chr9:36467313 | Lac11g1717 | Lac-Chr11:31201364 | 8.60E-43 | transposed | |
| Lac11g1283 | Lac-Chr11:18846374 | Lac11g1717 | Lac-Chr11:31201364 | 6.80E-09 | wgd | |
| Lac11g1717 | Lac-Chr11:31201364 | Lac5g1410 | Lac-Chr5:28299866 | 3.90E-24 | wgd | |
| Lac11g1717 | Lac-Chr11:31201364 | Lac9g0505 | Lac-Chr9:9587043 | 2.70E-94 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g1717 | K01051 | - | csv:101216005 | 845.114 |