Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1717 ATGGCTCAAAAGCTCCATTTTTCAATCCTTTTCATTTCTCTGTCCATTTTATCATGGATCTCCCCATCGTTTTCAAGCAACTACAATGCCATAGATTTATGGTGCAGCCGAACCCCATATCCCGAAGAGTGCAAGCACTTCTTCAAGAACGGGAAATTCAACCCGAAAAAGCTGTCAGAGTTCAAGAAATCGGCGCTGAAAATCGCCATGGAAAGAGCTCTAACAGCTGAAACAGTGACAAAGCAACTGGGCCACAAATGCCGAAGCCAGAAAGAGAAAGCCGCATGGGCCGACTGTCTGGAGCTCTACCAGAACACAATCCTCCAACTCAACAGAACCTTCTCCGACCGATGCTCCGATTTCGACATCCAAACGTGGCTCAGCTCGGCGTTGACTAACCTCGAGACGTGCCGTGCTGGGTTCGTTGACCTGAACGTCAAGGACTACGACGCCGTTTTCCCCATTCTGGCGAGGAACAACGTGACGAAGCTCATCAGCAACAGTTTGGCGATGAATAACTGCACGGAGACGGAGACGGAGTACTCGGGGTACAGTGGCGGGTTTCCCAAGTGGGTTCGGGCGGGTGAGCGGCGGCTGCTGCAGGCGGCGGCGCCCAAGGCGAACTTGGTGGTGGCGCAGGATGGGTCGGGGAATTTTAGGACGGTTCAGGCGGCGGTGGACGCGGCGGCGAAGAGGAGTGGGAGTGGGAGGTTTGTTATACATATAAAGAGAGGGGTTTACAAGGAGAATGTTGTGATTGGGAATAAAGTGAAGAATTTGATGCTTGTTGGGGATGGATTGAGGTATACTATTATTACTGGAAGTAGAAGTGTTGGTGGTGGTTCCACAACTTTCAACTCTGCTACTGTTGCTGTGACTGGGGAAGGTTTCATTGCCCGTGGCATCACATTCCGCAACACCGCTGGACCCCAAAACCACCAAGCGGTAGCCCTCCGGTCGGGCTCCGATCTCTCTGTCTTCTACCAGTGCGGCTTCGAGGGATATCAAGACACTCTCTACGTCCATTCGCAAAGACAATTCTACAGAGAATGCTACATTTACGGTACCGTCGATTTCATCTTCGGCAACGCCGCCGTGGTCTTGCAAAACTGTATGATCTACGCAAGAAAACCCATCCCCGGCCAGCAATGCGTCGTCACCGCCCAAGGCCGGACCGACCCGAACCAGAACACCGGGATCTCGATCCACAACTCGAGAGTGATGGCCGCGGCCGACCTGAAGCCGGTGCTAAGCTCGGTGAGAACCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGCACGGTTTACTTGCAAAGCTTCATGGATAGCTTGGTGAACCCTGCAGGGTGGTTGGAATGGAGTGGGAATTTTGCACTGAATACATTGTATTATGGAGAGTACAAGAATTTTGGGCCTGGTTCTTCTACTGCAAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGTCACAGAAGCATCAAAGTTTACTGTTGGGAATTTTATTGCTGGGAAGTCATGGCTACCTGCCACTGGAGTGCCATTCAATGCTGGCCTCTGA 1563 51.7 MAQKLHFSILFISLSILSWISPSFSSNYNAIDLWCSRTPYPEECKHFFKNGKFNPKKLSEFKKSALKIAMERALTAETVTKQLGHKCRSQKEKAAWADCLELYQNTILQLNRTFSDRCSDFDIQTWLSSALTNLETCRAGFVDLNVKDYDAVFPILARNNVTKLISNSLAMNNCTETETEYSGYSGGFPKWVRAGERRLLQAAAPKANLVVAQDGSGNFRTVQAAVDAAAKRSGSGRFVIHIKRGVYKENVVIGNKVKNLMLVGDGLRYTIITGSRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYQCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAAADLKPVLSSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWSGNFALNTLYYGEYKNFGPGSSTARRVKWKGYRVITSVTEASKFTVGNFIAGKSWLPATGVPFNAGL 520
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 31201364 31203985 + Lag0032355.1 Lac11g1717 587575
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1717 520 SUPERFAMILY Pectin lyase-like 203 519 IPR011050 -
Lac11g1717 520 PANTHER PECTINESTERASE 7 511 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac11g1717 520 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857(InterPro)
Lac11g1717 520 FunFam Pectinesterase 202 520 - -
Lac11g1717 520 Pfam Plant invertase/pectin methylesterase inhibitor 30 171 IPR006501 GO:0004857(InterPro)
Lac11g1717 520 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Lac11g1717 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 174 IPR035513 -
Lac11g1717 520 SMART PMEI_2 26 171 IPR006501 GO:0004857(InterPro)
Lac11g1717 520 Pfam Pectinesterase 208 505 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac11g1717 520 CDD PMEI-like_3 33 173 - -
Lac11g1717 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Lac11g1717 520 Gene3D - 202 520 IPR012334 -
Lac11g1717 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 174 IPR035513 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1717 Lac-Chr11:31201364 Lac5g2829 Lac-Chr5:46668782 3.80E-213 dispersed
Lac10g2954 Lac-Chr10:44140940 Lac11g1717 Lac-Chr11:31201364 3.40E-39 transposed
Lac11g2284 Lac-Chr11:38916533 Lac11g1717 Lac-Chr11:31201364 2.20E-39 transposed
Lac1g3230 Lac-Chr1:52275564 Lac11g1717 Lac-Chr11:31201364 1.10E-122 transposed
Lac3g0967 Lac-Chr3:7861680 Lac11g1717 Lac-Chr11:31201364 6.20E-35 transposed
Lac3g1116 Lac-Chr3:9216998 Lac11g1717 Lac-Chr11:31201364 1.30E-43 transposed
Lac8g1609 Lac-Chr8:33968880 Lac11g1717 Lac-Chr11:31201364 7.50E-137 transposed
Lac8g2709 Lac-Chr8:44550375 Lac11g1717 Lac-Chr11:31201364 6.90E-48 transposed
Lac9g1689 Lac-Chr9:36467313 Lac11g1717 Lac-Chr11:31201364 8.60E-43 transposed
Lac11g1283 Lac-Chr11:18846374 Lac11g1717 Lac-Chr11:31201364 6.80E-09 wgd
Lac11g1717 Lac-Chr11:31201364 Lac5g1410 Lac-Chr5:28299866 3.90E-24 wgd
Lac11g1717 Lac-Chr11:31201364 Lac9g0505 Lac-Chr9:9587043 2.70E-94 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1717 K01051 - csv:101216005 845.114