Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1756 | ATGGCGGGGACGGGAGATGAAGCCGATGGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCTCTTTCACAAGTTCGTGATGATGTTGCTGCGGCTTACAGGAAAGAAATTGGGTGGCAGACGGGTGAAAAGCTTCTTCCTTTTAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGAAGATGACGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATATCAAAAGGAAAATTAGCTTCAATACGGCCACCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGGAAATAGCTACTCAAGCTATACTTCTAGCTCACTTACAGATAGCAGTTCGAGCTTAATTACATCCTACTCTCATTTTCCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACAAAAAATAGCCCCATCATAGCCAACCATTCTAGACATCAATCCGTTGATATTGAGGAGCATATGGATGGTGTACGTTCTTCTTCCTATGTTTCAGATTGCCCACAAACATTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCCTGGGTTTCTGATGAAGCTTCATCCTCAGGTGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGGAATGTATGCTATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCAGAGGAAGCTAGGAAGCTTGAAGAGGTCAACAATAAAGAGGTGGCTGCCAAAGAATTTGCGAGGAAAGAGAGGGCAAAGCATGAAGCATTGAGAAGAGAAGCAAAGTATGTAAAAGAACGTGCCGAAAGGGAGGGCGTCTATAAGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTGTCTGCCACATCATCTTTCTCTGATGATCTTAAGATTGGAATGGGAGCACATGGTAAAGTTTATAAGTGCAGTTTGCATCATACAACGGTAGCAGTGAAGGTTCTGCACACTAGAGATGGTCAGAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATCTACTACTACTCCTTGGTGCGTGTCCAGATAAGAACTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCAATACAACTGCAATTCCATGGTATGAGAGATTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCATCGTGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGACGTTGGTCTTTCTACCGTGTTTAATTCAGACCCTCTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCCAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTCGTGGAAACCGCCATTGATAACCACACTTTAATAAATATTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAGGAGGCATATGAACTGGCAAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCGAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTCCAGGATGTGATGAACGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGGAGTGGCTTCAAAAGAACGATATCTCACCAATGACGAAGTTGCCGCTACCAGATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATAGTTGAGTGGAACTCCAGAAAAAGCCAATACCAAGTTACCAACCTCCATTTTTAA | 2457 | 42.33 | MAGTGDEADGNLMLLPSPSPVVAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHIIPRITSVPTPMGNSIPLSQVRDDVAAAYRKEIGWQTGEKLLPFKKMFAQRKVQLDVVTLEEDDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETNVSIKDDASEASSGNSYSSYTSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKNSPIIANHSRHQSVDIEEHMDGVRSSSYVSDCPQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLNKQRSEEARKLEEVNNKEVAAKEFARKERAKHEALRREAKYVKERAEREGVYKKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSDDLKIGMGAHGKVYKCSLHHTTVAVKVLHTRDGQKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTTAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLINILDIEAGHWPVEEAYELARLGLRCAELQRKDRPNLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEEWLQKNDISPMTKLPLPDKNLIPNYSLLSAIVEWNSRKSQYQVTNLHF | 818 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31848139 | 31856832 | - | Lag0032394.1 | Lac11g1756 | 587614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1756 | 818 | Coils | Coil | 329 | 349 | - | - | |
Lac11g1756 | 818 | SUPERFAMILY | RING/U-box | 727 | 811 | - | - | |
Lac11g1756 | 818 | Gene3D | Transferase(Phosphotransferase) domain 1 | 529 | 738 | - | - | |
Lac11g1756 | 818 | Gene3D | HUPs | 22 | 167 | IPR014729 | - | |
Lac11g1756 | 818 | CDD | STK_N | 21 | 173 | - | - | |
Lac11g1756 | 818 | SMART | serkin_6 | 456 | 718 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1756 | 818 | SMART | Ubox_2 | 742 | 804 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac11g1756 | 818 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 22 | 161 | - | - | |
Lac11g1756 | 818 | ProSitePatterns | Protein kinases ATP-binding region signature. | 462 | 483 | IPR017441 | GO:0005524(InterPro) | |
Lac11g1756 | 818 | PANTHER | OS02G0152300 PROTEIN | 22 | 801 | IPR051348 | - | |
Lac11g1756 | 818 | CDD | RING-Ubox_WDSUB1-like | 740 | 794 | - | - | |
Lac11g1756 | 818 | Pfam | U-box domain | 739 | 809 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac11g1756 | 818 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 574 | 586 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g1756 | 818 | ProSiteProfiles | Protein kinase domain profile. | 456 | 718 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1756 | 818 | ProSiteProfiles | U-box domain profile. | 738 | 811 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac11g1756 | 818 | Coils | Coil | 389 | 409 | - | - | |
Lac11g1756 | 818 | Coils | Coil | 357 | 377 | - | - | |
Lac11g1756 | 818 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 739 | 814 | IPR013083 | - | |
Lac11g1756 | 818 | Gene3D | Phosphorylase Kinase; domain 1 | 425 | 528 | - | - | |
Lac11g1756 | 818 | Pfam | Protein tyrosine and serine/threonine kinase | 461 | 712 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g1756 | 818 | SUPERFAMILY | Protein kinase-like (PK-like) | 434 | 715 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1756 | Lac-Chr11:31848139 | Lac2g0696 | Lac-Chr2:5260915 | 4.90E-106 | dispersed | |
Lac11g1756 | Lac-Chr11:31848139 | Lac6g3081 | Lac-Chr6:48360680 | 3.30E-126 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85759 | PF00069 | Pkinase | 1.40E-40 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1756 | - | - | - | 0.0 |