Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1756 ATGGCGGGGACGGGAGATGAAGCCGATGGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCTCTTTCACAAGTTCGTGATGATGTTGCTGCGGCTTACAGGAAAGAAATTGGGTGGCAGACGGGTGAAAAGCTTCTTCCTTTTAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGAAGATGACGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATATCAAAAGGAAAATTAGCTTCAATACGGCCACCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGGAAATAGCTACTCAAGCTATACTTCTAGCTCACTTACAGATAGCAGTTCGAGCTTAATTACATCCTACTCTCATTTTCCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACAAAAAATAGCCCCATCATAGCCAACCATTCTAGACATCAATCCGTTGATATTGAGGAGCATATGGATGGTGTACGTTCTTCTTCCTATGTTTCAGATTGCCCACAAACATTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCCTGGGTTTCTGATGAAGCTTCATCCTCAGGTGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGGAATGTATGCTATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCAGAGGAAGCTAGGAAGCTTGAAGAGGTCAACAATAAAGAGGTGGCTGCCAAAGAATTTGCGAGGAAAGAGAGGGCAAAGCATGAAGCATTGAGAAGAGAAGCAAAGTATGTAAAAGAACGTGCCGAAAGGGAGGGCGTCTATAAGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTGTCTGCCACATCATCTTTCTCTGATGATCTTAAGATTGGAATGGGAGCACATGGTAAAGTTTATAAGTGCAGTTTGCATCATACAACGGTAGCAGTGAAGGTTCTGCACACTAGAGATGGTCAGAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATCTACTACTACTCCTTGGTGCGTGTCCAGATAAGAACTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCAATACAACTGCAATTCCATGGTATGAGAGATTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCATCGTGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGACGTTGGTCTTTCTACCGTGTTTAATTCAGACCCTCTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCCAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTCGTGGAAACCGCCATTGATAACCACACTTTAATAAATATTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAGGAGGCATATGAACTGGCAAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCGAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTCCAGGATGTGATGAACGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGGAGTGGCTTCAAAAGAACGATATCTCACCAATGACGAAGTTGCCGCTACCAGATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATAGTTGAGTGGAACTCCAGAAAAAGCCAATACCAAGTTACCAACCTCCATTTTTAA 2457 42.33 MAGTGDEADGNLMLLPSPSPVVAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHIIPRITSVPTPMGNSIPLSQVRDDVAAAYRKEIGWQTGEKLLPFKKMFAQRKVQLDVVTLEEDDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETNVSIKDDASEASSGNSYSSYTSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKNSPIIANHSRHQSVDIEEHMDGVRSSSYVSDCPQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLNKQRSEEARKLEEVNNKEVAAKEFARKERAKHEALRREAKYVKERAEREGVYKKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSDDLKIGMGAHGKVYKCSLHHTTVAVKVLHTRDGQKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTTAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLINILDIEAGHWPVEEAYELARLGLRCAELQRKDRPNLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEEWLQKNDISPMTKLPLPDKNLIPNYSLLSAIVEWNSRKSQYQVTNLHF 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31848139 31856832 - Lag0032394.1 Lac11g1756 587614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1756 818 Coils Coil 329 349 - -
Lac11g1756 818 SUPERFAMILY RING/U-box 727 811 - -
Lac11g1756 818 Gene3D Transferase(Phosphotransferase) domain 1 529 738 - -
Lac11g1756 818 Gene3D HUPs 22 167 IPR014729 -
Lac11g1756 818 CDD STK_N 21 173 - -
Lac11g1756 818 SMART serkin_6 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 SMART Ubox_2 742 804 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 161 - -
Lac11g1756 818 ProSitePatterns Protein kinases ATP-binding region signature. 462 483 IPR017441 GO:0005524(InterPro)
Lac11g1756 818 PANTHER OS02G0152300 PROTEIN 22 801 IPR051348 -
Lac11g1756 818 CDD RING-Ubox_WDSUB1-like 740 794 - -
Lac11g1756 818 Pfam U-box domain 739 809 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 ProSiteProfiles Protein kinase domain profile. 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 ProSiteProfiles U-box domain profile. 738 811 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 Coils Coil 389 409 - -
Lac11g1756 818 Coils Coil 357 377 - -
Lac11g1756 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 814 IPR013083 -
Lac11g1756 818 Gene3D Phosphorylase Kinase; domain 1 425 528 - -
Lac11g1756 818 Pfam Protein tyrosine and serine/threonine kinase 461 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 SUPERFAMILY Protein kinase-like (PK-like) 434 715 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1756 Lac-Chr11:31848139 Lac2g0696 Lac-Chr2:5260915 4.90E-106 dispersed
Lac11g1756 Lac-Chr11:31848139 Lac6g3081 Lac-Chr6:48360680 3.30E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85759 PF00069 Pkinase 1.40E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1756 - - - 0.0