Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1756 ATGGCGGGGACGGGAGATGAAGCCGATGGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCAGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCATCAATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCTCTTTCACAAGTTCGTGATGATGTTGCTGCGGCTTACAGGAAAGAAATTGGGTGGCAGACGGGTGAAAAGCTTCTTCCTTTTAAGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTGACTCTTGAAGAAGATGACGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGATTTTTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATATCAAAAGGAAAATTAGCTTCAATACGGCCACCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGGAAATAGCTACTCAAGCTATACTTCTAGCTCACTTACAGATAGCAGTTCGAGCTTAATTACATCCTACTCTCATTTTCCTTCTCCTTCCCCTTCCCTACCATTACAACGGTTTCAAGCTCTTTCAACCATCAATCAATCTCTTCTTACAACAAAAAATAGCCCCATCATAGCCAACCATTCTAGACATCAATCCGTTGATATTGAGGAGCATATGGATGGTGTACGTTCTTCTTCCTATGTTTCAGATTGCCCACAAACATTGAGTCGGGCCTCTAGTTGTAAAAGCTTGCCAACAGATAACCAGTCCTGGGTTTCTGATGAAGCTTCATCCTCAGGTGCATTCAATGATTATTCTTCATGTGAAAGTCAGGCGGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATTGAACTAAGACATGCAAGAGGAATGTATGCTATTGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCAGAGGAAGCTAGGAAGCTTGAAGAGGTCAACAATAAAGAGGTGGCTGCCAAAGAATTTGCGAGGAAAGAGAGGGCAAAGCATGAAGCATTGAGAAGAGAAGCAAAGTATGTAAAAGAACGTGCCGAAAGGGAGGGCGTCTATAAGAAGGAAGCAGAGACGAAAGCTCTTCAAGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGTCCTCTGCAACAATATCAACATTTTCAGTGGGAAGATATTGTGTCTGCCACATCATCTTTCTCTGATGATCTTAAGATTGGAATGGGAGCACATGGTAAAGTTTATAAGTGCAGTTTGCATCATACAACGGTAGCAGTGAAGGTTCTGCACACTAGAGATGGTCAGAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATTCATCATCCCCATCTACTACTACTCCTTGGTGCGTGTCCAGATAAGAACTGCCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCAGAGGCAATACAACTGCAATTCCATGGTATGAGAGATTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCATCGTGATCTTAAGCCAGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGTGACGTTGGTCTTTCTACCGTGTTTAATTCAGACCCTCTAATGTCTACTGCATTCAAGGATAGTGGACCAGTTGGAACTCTCTGTTACATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCCAAGTCGGATGTGTATGCTTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCATTAACCCATGTCGTGGAAACCGCCATTGATAACCACACTTTAATAAATATTCTAGATATAGAGGCTGGGCATTGGCCTGTCGAGGAGGCATATGAACTGGCAAGATTAGGACTTCGCTGTGCAGAGCTGCAACGTAAAGATAGGCCGAACTTAAAGGATCAAGTACTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAATTCGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCAATTCTCCAGGATGTGATGAACGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCGATAGAGGAGTGGCTTCAAAAGAACGATATCTCACCAATGACGAAGTTGCCGCTACCAGATAAGAATTTAATACCAAATTACAGTCTTCTCTCTGCAATAGTTGAGTGGAACTCCAGAAAAAGCCAATACCAAGTTACCAACCTCCATTTTTAA 2457 42.33 MAGTGDEADGNLMLLPSPSPVVAVAISGKKNSKYIIRWSLEKFLPEGIINFKLLHIIPRITSVPTPMGNSIPLSQVRDDVAAAYRKEIGWQTGEKLLPFKKMFAQRKVQLDVVTLEEDDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETNVSIKDDASEASSGNSYSSYTSSSLTDSSSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKNSPIIANHSRHQSVDIEEHMDGVRSSSYVSDCPQTLSRASSCKSLPTDNQSWVSDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLNKQRSEEARKLEEVNNKEVAAKEFARKERAKHEALRREAKYVKERAEREGVYKKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSDDLKIGMGAHGKVYKCSLHHTTVAVKVLHTRDGQKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTTAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNHTLINILDIEAGHWPVEEAYELARLGLRCAELQRKDRPNLKDQVLPLLLTLKKVADEARNSASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRRAIEEWLQKNDISPMTKLPLPDKNLIPNYSLLSAIVEWNSRKSQYQVTNLHF 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31848139 31856832 - Lag0032394.1 Lac11g1756 587614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1756 818 Coils Coil 329 349 - -
Lac11g1756 818 SUPERFAMILY RING/U-box 727 811 - -
Lac11g1756 818 Gene3D Transferase(Phosphotransferase) domain 1 529 738 - -
Lac11g1756 818 Gene3D HUPs 22 167 IPR014729 -
Lac11g1756 818 CDD STK_N 21 173 - -
Lac11g1756 818 SMART serkin_6 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 SMART Ubox_2 742 804 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 161 - -
Lac11g1756 818 ProSitePatterns Protein kinases ATP-binding region signature. 462 483 IPR017441 GO:0005524(InterPro)
Lac11g1756 818 PANTHER OS02G0152300 PROTEIN 22 801 IPR051348 -
Lac11g1756 818 CDD RING-Ubox_WDSUB1-like 740 794 - -
Lac11g1756 818 Pfam U-box domain 739 809 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 ProSiteProfiles Protein kinase domain profile. 456 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 ProSiteProfiles U-box domain profile. 738 811 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g1756 818 Coils Coil 389 409 - -
Lac11g1756 818 Coils Coil 357 377 - -
Lac11g1756 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 814 IPR013083 -
Lac11g1756 818 Gene3D Phosphorylase Kinase; domain 1 425 528 - -
Lac11g1756 818 Pfam Protein tyrosine and serine/threonine kinase 461 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1756 818 SUPERFAMILY Protein kinase-like (PK-like) 434 715 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1756 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1756 Lac-Chr11:31848139 Lac2g0696 Lac-Chr2:5260915 4.90E-106 dispersed
Lac11g1756 Lac-Chr11:31848139 Lac6g3081 Lac-Chr6:48360680 3.30E-126 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85759 PF00069 Pkinase 1.40E-40 CL0016 Lac PK