Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1795 ATGCCGGAATCGGAAAGTGGAACGCCGGTACCGTCGGCGCCGGCGACGCCCGGGACGCCGGGAGGGCCGCTGTTTTCCGGTCTACGGGTGGATTCGTTGTCGTACGATCGGAAGTCAATGCCGCGGTGCAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCATCCTCACACGTGCTTCACTGACTTCCCTGCACCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCCTTATATTTGCTGCAACGGCAGGGCCCATTGTGAACCAAAAGTACAACGGCGTCGAGACTCTCATCGGAAACGCCGCATGCGCCGGCCTGGCCGTGATGATTGTAATTCTGTCGACCGGACACATCTCCGGCGCCCACCTGAACCCATCGCTCACCATTGCCTTCGCCGCCCTCCGCCATTTCCCTTGGGTCCAAGTTCCGGCCTACATCGCCGCCCAAGTCTCCGCCTCCATCTGCGCCTCCTTCGCTCTCAAAGGTGTTTTTCACCCTTTCATGTCCGGCGGCGTCACCGTCCCCTCCGTCAGCACCGGCCAGGCCTTCGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGACACTCGCGCGGTCGGAGAGTTGGCCGGAATTGCAGTCGGAGCTACAGTGCTACTCAACATTCTTGTCGCAGGGCCCTCAACCGGTGCTTCAATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAACTACAGAGAATTGTGGCTGTATCTGGTGGCGCCGACGCTGGGGCGATCGTGGGCGCCGGAACTTACACAATGGTGA 840 59.88 MPESESGTPVPSAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGHPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILVAGPSTGASMNPVRTLGPAVAAGNYRELWLYLVAPTLGRSWAPELTQW 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32486240 32490374 + Lag0032433.1 Lac11g1795 587653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1795 279 SUPERFAMILY Aquaporin-like 69 274 IPR023271 -
Lac11g1795 279 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Lac11g1795 279 PANTHER AQUAPORIN NIP2-1 68 269 IPR034294 -
Lac11g1795 279 Gene3D Glycerol uptake facilitator protein. 64 274 IPR023271 -
Lac11g1795 279 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 PRINTS Major intrinsic protein family signature 260 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 FunFam Aquaporin NIP2-1 60 273 - -
Lac11g1795 279 Pfam Major intrinsic protein 68 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1795 279 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1795 Lac-Chr11:32486240 Lac1g3444 Lac-Chr1:53840840 5.30E-52 dispersed
Lac11g1795 Lac-Chr11:32486240 Lac11g1797 Lac-Chr11:32512416 6.00E-112 proximal
Lac11g0608 Lac-Chr11:6231782 Lac11g1795 Lac-Chr11:32486240 1.50E-84 transposed
Lac11g1795 Lac-Chr11:32486240 Lac8g0645 Lac-Chr8:11004847 1.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1795 K09874 - csv:101212651 507.294