Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1797 ATGTCAGAGTCAGAAAGTGGGACATTGGTTTCATCGAGGGTGGAGTCCCAATGTTCAAGCCTCCGACAAGTGTCCCAATGTGAGTGCTTGCCTGTTAATGCCCCAAAGAGGAGCCAAGGTCACATGTGCTTCACTCACTTCCCTACTCTTGATGTCTCTCTCATTAGAAAGCTTGGAGCAGAATTCGTGGGCACATTCATCCTCATATTTGCCGCAACAGCCGCACCCATCATCAACCAAAAGTACAACGCCGCCCTGTCCCTGATCGGAAACGCCGCATGCGCCGGCCTAGCGGTGATGATCGTAATTATGTCGATCGGCCACATCTCCGGCGCCCACCTGAACCCGTCGCTCACCATCGCCTTAGCCGCCCTCCGCCACTTCCCGTGGGTCCAAGTGCCGGCCTACATCACCGCCCAAGTCTCCGCCTCCATCTGCGCCTCCTTCGCTCTCAAAGGAGTATTTCACCCTTTCATGTCCGGCGGCGTCACCGTCCCCTCCGTCGGCACCGGCCAGGCTTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTTGTCGTCACTGCTGTCGCTACTGATACTCGCGCTGTTGGAGAGTTGGCCGGAATTGCAGTCGGAGCTACAGTGCTGCTCAACATTCTTATCGCAGGGCCATCCACCGGTGGTTCAATGAATCCAGTGCGGACTCTGGGCCCCGCCGTGGCCGCCGGAAATTACAGAGAATTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCAATTGTCGGCGCCGGAACCTACGCCGCCGTGAAGCTCAAAGATGATAAACTGGAGGTTCCGTCGCCGGTGAGGAGCTTCCGTCGATGA 849 56.42 MSESESGTLVSSRVESQCSSLRQVSQCECLPVNAPKRSQGHMCFTHFPTLDVSLIRKLGAEFVGTFILIFAATAAPIINQKYNAALSLIGNAACAGLAVMIVIMSIGHISGAHLNPSLTIALAALRHFPWVQVPAYITAQVSASICASFALKGVFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWVYMVAPTLGAIVGAGTYAAVKLKDDKLEVPSPVRSFRR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32512416 32515728 + Lag0032435.1 Lac11g1797 587655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1797 282 Pfam Major intrinsic protein 52 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 Gene3D Glycerol uptake facilitator protein. 32 273 IPR023271 -
Lac11g1797 282 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Lac11g1797 282 FunFam Aquaporin NIP2-1 44 275 - -
Lac11g1797 282 SUPERFAMILY Aquaporin-like 52 267 IPR023271 -
Lac11g1797 282 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1797 282 PANTHER AQUAPORIN NIP2-1 48 269 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0608 Lac-Chr11:6231782 Lac11g1797 Lac-Chr11:32512416 3.90E-85 dispersed
Lac11g1797 Lac-Chr11:32512416 Lac8g0663 Lac-Chr8:11678922 2.10E-56 dispersed
Lac11g1795 Lac-Chr11:32486240 Lac11g1797 Lac-Chr11:32512416 6.00E-112 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1797 K09874 - csv:101212651 439.113