Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1797 | ATGTCAGAGTCAGAAAGTGGGACATTGGTTTCATCGAGGGTGGAGTCCCAATGTTCAAGCCTCCGACAAGTGTCCCAATGTGAGTGCTTGCCTGTTAATGCCCCAAAGAGGAGCCAAGGTCACATGTGCTTCACTCACTTCCCTACTCTTGATGTCTCTCTCATTAGAAAGCTTGGAGCAGAATTCGTGGGCACATTCATCCTCATATTTGCCGCAACAGCCGCACCCATCATCAACCAAAAGTACAACGCCGCCCTGTCCCTGATCGGAAACGCCGCATGCGCCGGCCTAGCGGTGATGATCGTAATTATGTCGATCGGCCACATCTCCGGCGCCCACCTGAACCCGTCGCTCACCATCGCCTTAGCCGCCCTCCGCCACTTCCCGTGGGTCCAAGTGCCGGCCTACATCACCGCCCAAGTCTCCGCCTCCATCTGCGCCTCCTTCGCTCTCAAAGGAGTATTTCACCCTTTCATGTCCGGCGGCGTCACCGTCCCCTCCGTCGGCACCGGCCAGGCTTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTTGTCGTCACTGCTGTCGCTACTGATACTCGCGCTGTTGGAGAGTTGGCCGGAATTGCAGTCGGAGCTACAGTGCTGCTCAACATTCTTATCGCAGGGCCATCCACCGGTGGTTCAATGAATCCAGTGCGGACTCTGGGCCCCGCCGTGGCCGCCGGAAATTACAGAGAATTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCAATTGTCGGCGCCGGAACCTACGCCGCCGTGAAGCTCAAAGATGATAAACTGGAGGTTCCGTCGCCGGTGAGGAGCTTCCGTCGATGA | 849 | 56.42 | MSESESGTLVSSRVESQCSSLRQVSQCECLPVNAPKRSQGHMCFTHFPTLDVSLIRKLGAEFVGTFILIFAATAAPIINQKYNAALSLIGNAACAGLAVMIVIMSIGHISGAHLNPSLTIALAALRHFPWVQVPAYITAQVSASICASFALKGVFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWVYMVAPTLGAIVGAGTYAAVKLKDDKLEVPSPVRSFRR | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32512416 | 32515728 | + | Lag0032435.1 | Lac11g1797 | 587655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1797 | 282 | Pfam | Major intrinsic protein | 52 | 261 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | Gene3D | Glycerol uptake facilitator protein. | 32 | 273 | IPR023271 | - | |
Lac11g1797 | 282 | ProSitePatterns | MIP family signature. | 113 | 121 | IPR022357 | - | |
Lac11g1797 | 282 | FunFam | Aquaporin NIP2-1 | 44 | 275 | - | - | |
Lac11g1797 | 282 | SUPERFAMILY | Aquaporin-like | 52 | 267 | IPR023271 | - | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 132 | 151 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 95 | 119 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 207 | 229 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 56 | 75 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 244 | 264 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PRINTS | Major intrinsic protein family signature | 176 | 194 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1797 | 282 | PANTHER | AQUAPORIN NIP2-1 | 48 | 269 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0608 | Lac-Chr11:6231782 | Lac11g1797 | Lac-Chr11:32512416 | 3.90E-85 | dispersed | |
Lac11g1797 | Lac-Chr11:32512416 | Lac8g0663 | Lac-Chr8:11678922 | 2.10E-56 | dispersed | |
Lac11g1795 | Lac-Chr11:32486240 | Lac11g1797 | Lac-Chr11:32512416 | 6.00E-112 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1797 | K09874 | - | csv:101212651 | 439.113 |