Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1813 ATGGACCCGGCCGGACCACCTGGATCGGGATCGGGATTGCCTCCATCCCAATCCCACTCGCAATTTGGAGTTTCGCCGCCGGATATCACCACGCCGCCCTTGACCGTCGACGCCATAACCGATTCTCAGCAAGTCGAAGCTGCTTCGCCGATTAGTAGCCGCCCTCCTGCGCCGTCTTCCTTAAATTACGAGGAACTCATTCGTCTCTCCACCGCCGGCCAGATGCAAGTCGACGACGACGCGCTCGCCGGAGAAGAAGGCGACCGCACCGGCGGCGCCGCCGGTAATCGGTGGCCTCGTCAGGAAACTCTCGCTTTGCTTAAAATTAGGTCAGATATGGATTCCGTCTTCCGCGATGCTACACTCAAAGGTCCTCTCTGGGATGAAGTCTCCAGGAAGCTAGCGGAATTGGGTTACAACAGAAGTGCCAAAAAATGCAAAGAGAAATTCGAGAACGTTCAGAAATATTACAAGCGCACAAAAGAAGGCCGTGGCGGCCGTCAAGATGGCAAGACCTACAAATTCTTCACACAGCTTGAGGCCCTACACAACGCCGCCGCATCTATTCCCGCAACCACCGCTCCAAACGTGGCGCCTTCTTTCTCATCACTGCCCAGTACTCCCTTCGGGATCAGCAACCCCACTCCAATCTCCTCCGTCAAAATTTCACCCACCCCAATGGGAATCTTTTCACCTGCAGATCATTTCACCGTCAGGCCGCCGACCGTGGCCGCCCCCACGGGTGTCAGCTTTTCGTCGAACACCTCGTCTGCATCCACGGAGGAGGACGACAACGAAGAGGAAGAGGAGATTATGGGGTTTGATGTTGACCTCGAAGGGGAGCCGTCGAGTGTCGCCGGGACCAGCCGGAAGCGGCGGAGGGGGGCGGTTAAGGGAAGTGGGTCGAGAAGCCATAAGATGATGATGGAGTTTTTCGAGGGTTTGATGAAGCAAGTGATGCACAAACAGGAGGTTATGCAACAGAAGTTTTTGGAGGCGATTGAGAAGAGGGAACAGGATAGGATGATTAGAGAAGAGACGTGGAAAAGGCAAGAGATGGCTAGATTGAGCCGTGAGCAAGAGAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCTATAATTAATTTTCTTCAGAAATTTACCGGCCAAAACATTCAATTACCTGTGGTGAATATCTCTTCTTCTGCTACCCCACAACAACAACAGCAACAATATGATGTGCCTGTGTCTCTGCCTCTGCCTGTGTCTACGCCTGTGGCTATGCCTGTTCCAGTGTCAGTGCCGGTGCCACTATCTCCTGTCCCCGCTCCGCCATTGCAGCCACAGACTCTGCCACAACAGCAAAATAAAAAACCCACACAGCTTCCGAATCCGCCGCCGCCATTGGATCAGGCAATGCCATATCAGGAAATCAGCCAAGGGGGAGATGGGAGTTCAGAACCCATTTCTTCAAGATGGCCCAAACCGGAAGTTCTGGCGCTGATCAAGCTGAGAGGTGGGCTTGAATCGAGGTATCAAGAGACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGCAACGGATGGGTTACAAGAGAAGTGCCAAACGGTGCAAGGAGAAATGGGAGAACATCAATAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAAAAACGCCGCGAGGATTCCAAAACCTGCCCCTATTTCAACGAACTCGACGCCCTTTACCGCAAGAAGATCCTCGCCGGCGGTTCTGATGGCGGTGGTAGTGGCAGTCGAAGCTCGTTCAGCGACACAAGCAAATTCGAACAAGAAATGGCCCCATCGTCGTCAACAGTGATTATTCCAACAGATCATGCCGAAACCCATTCTTCCATTCCACAACCTCAATCTCAAACCACACTTGCACAAGGCTTATCCGCAAGTCTCTTCGGTGAAGCAACTGAAGAACAACCAGCAACATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGACCTTTACCGACCGGCCGGTAGCAACCATGTCGATCGAGACGAAGACGACGACGACAATGACGGAGACTATTGCAGCGACGATGACGACGATACACCAGAAGATCAAAAGAGAAAAAGCAACAACATGGATTTCAAAATAGAGTTTCAGAGAAGAAATGTAGGAAACTCCAATGGCGTGGGAAGTGAATTTCAATCAATGGCAGTGGTTCAATAA 2223 51.6 MDPAGPPGSGSGLPPSQSHSQFGVSPPDITTPPLTVDAITDSQQVEAASPISSRPPAPSSLNYEELIRLSTAGQMQVDDDALAGEEGDRTGGAAGNRWPRQETLALLKIRSDMDSVFRDATLKGPLWDEVSRKLAELGYNRSAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNAAASIPATTAPNVAPSFSSLPSTPFGISNPTPISSVKISPTPMGIFSPADHFTVRPPTVAAPTGVSFSSNTSSASTEEDDNEEEEEIMGFDVDLEGEPSSVAGTSRKRRRGAVKGSGSRSHKMMMEFFEGLMKQVMHKQEVMQQKFLEAIEKREQDRMIREETWKRQEMARLSREQERMAQERTISASRDAAIINFLQKFTGQNIQLPVVNISSSATPQQQQQQYDVPVSLPLPVSTPVAMPVPVSVPVPLSPVPAPPLQPQTLPQQQNKKPTQLPNPPPPLDQAMPYQEISQGGDGSSEPISSRWPKPEVLALIKLRGGLESRYQETGPKGPLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILAGGSDGGGSGSRSSFSDTSKFEQEMAPSSSTVIIPTDHAETHSSIPQPQSQTTLAQGLSASLFGEATEEQPATSTKPEDIVNELMELQDLYRPAGSNHVDRDEDDDDNDGDYCSDDDDDTPEDQKRKSNNMDFKIEFQRRNVGNSNGVGSEFQSMAVVQ 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32745947 32748728 + Lag0032451.1 Lac11g1813 587671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1813 740 Pfam Myb/SANT-like DNA-binding domain 96 182 IPR044822 -
Lac11g1813 740 Pfam Myb/SANT-like DNA-binding domain 488 575 IPR044822 -
Lac11g1813 740 MobiDBLite consensus disorder prediction 260 276 - -
Lac11g1813 740 ProSiteProfiles Myb-like domain profile. 482 546 IPR001005 -
Lac11g1813 740 FunFam Trihelix transcription factor GT-2 490 551 - -
Lac11g1813 740 CDD GT1 96 161 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 1 97 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 683 699 - -
Lac11g1813 740 FunFam Trihelix transcription factor GT-2 98 159 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 35 69 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 720 740 - -
Lac11g1813 740 SMART sant 486 548 IPR001005 -
Lac11g1813 740 SMART sant 94 156 IPR001005 -
Lac11g1813 740 MobiDBLite consensus disorder prediction 11 28 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 700 715 - -
Lac11g1813 740 Gene3D - 490 551 - -
Lac11g1813 740 Gene3D - 98 159 - -
Lac11g1813 740 CDD GT1 488 553 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 588 641 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 581 740 - -
Lac11g1813 740 PANTHER FI21293P1 71 583 - -
Lac11g1813 740 ProSiteProfiles Myb-like domain profile. 96 154 IPR001005 -
Lac11g1813 740 MobiDBLite consensus disorder prediction 438 489 - -
Lac11g1813 740 MobiDBLite consensus disorder prediction 244 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1813 Lac-Chr11:32745947 Lac9g0286 Lac-Chr9:4524302 1.50E-74 dispersed
Lac10g1536 Lac-Chr10:15589180 Lac11g1813 Lac-Chr11:32745947 6.80E-34 transposed
Lac10g2908 Lac-Chr10:43682996 Lac11g1813 Lac-Chr11:32745947 4.30E-39 transposed
Lac13g0637 Lac-Chr13:4732206 Lac11g1813 Lac-Chr11:32745947 9.80E-31 transposed
Lac3g2042 Lac-Chr3:24282417 Lac11g1813 Lac-Chr11:32745947 3.60E-40 transposed
Lac11g1813 Lac-Chr11:32745947 Lac2g1690 Lac-Chr2:15438676 9.60E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22935 PF13837 Myb_DNA-bind_4 9.80E-23 CL0123 Lac TF