Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1844 ATGAGCTCTCAGAATTCCGCTGAAGACTGTCTCGGATGGGCCGCAAGGGACTCTTCTGGCTTTCTATCTCCTTACAGATTCAGTCGTAGGGTTCTTGGAGATGATGATGTTTCAATTACAATAACACATTGCGGAGTTTGTTATGCGGATGTAGCATGGACAAGAAATAAATTAGGAGATTCAAAGTATCCGTTGGTGCCTGGTCATGAGATTGCAGGAATTGTGAAAAATGTTGGTTCAAATGTTCACCGATTCAAAGTTGGAGATCATGTTGGGGTAGGTACTTATGTGAATACTTGTAGACAGTGCGAGTATTGTGAAAATGACCTAGAAGCTGTTTGTACGAGTGGATCCACTTATACTTTTAATTCAATTGATGTTGATGGTACAATTACGAAGGGAGGATATTCCAACTACATAGTTGTCCATGAGAGATACTGCTACAGAATACCTGACAATTATCCATTAGCTTCAGCTGCTCCTTTGCTCTGTGCTGGAATTACTGTTTATGCTCCAATGATTCGACATAAGATGAATCAACCTGGTAAATCTCTCGGAGTGATTGGGCTTGGTGGTCTCGGCCACTTGGCAGTGAAGTTTGGGAAGGCTTTTGGACTGAATGTGACGGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTGAGCCTTCTTGGAGCAGACAGATTTGTTATCTCATCTGACAAGGAGCAAATGGAGGCCTTGTCTAAGTCCCTCGACTTTATTATTGATTCCGCATCTGGTGATCACCCATTTGATCCATACATGTCTACATTGAAGATTGGTGGCGTTATGGTCCTGGTGGGGTTTCCTTCTCAAGTCAAGTTTAGTCCTGCAAGCCTGAATATGGGTTTGAGAACCGTTTCTGGTAGCTTAACTGGTGGCACTAAAGTGACCCAAGAAATGATTGATTTCTGTGCTGCTCATGGAATCTATCCAAACATAGAAGTGATTCCAATTCAATACTCTAATGAAGCTATCGAAAGGGTAATAAAGAAAGATGTCAAGTACCGATTTGTAATTGATATCCAAGGTTCCCTAAAATGA 1068 41.67 MSSQNSAEDCLGWAARDSSGFLSPYRFSRRVLGDDDVSITITHCGVCYADVAWTRNKLGDSKYPLVPGHEIAGIVKNVGSNVHRFKVGDHVGVGTYVNTCRQCEYCENDLEAVCTSGSTYTFNSIDVDGTITKGGYSNYIVVHERYCYRIPDNYPLASAAPLLCAGITVYAPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSLLGADRFVISSDKEQMEALSKSLDFIIDSASGDHPFDPYMSTLKIGGVMVLVGFPSQVKFSPASLNMGLRTVSGSLTGGTKVTQEMIDFCAAHGIYPNIEVIPIQYSNEAIERVIKKDVKYRFVIDIQGSLK 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33161640 33164755 + Lag0032482.1 Lac11g1844 587702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1844 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Lac11g1844 355 Gene3D - 165 320 - -
Lac11g1844 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Lac11g1844 355 FunFam probable cinnamyl alcohol dehydrogenase 13 184 - -
Lac11g1844 355 SMART PKS_ER_names_mod 14 348 IPR020843 GO:0016491(InterPro)
Lac11g1844 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Lac11g1844 355 PANTHER ALDEHYDE REDUCTASE 6 351 IPR047109 GO:0016616(PANTHER)|GO:0016616(InterPro)
Lac11g1844 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Lac11g1844 355 Pfam Alcohol dehydrogenase GroES-like domain 33 152 IPR013154 -
Lac11g1844 355 Gene3D - 13 350 - -
Lac11g1844 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lac11g1844 355 CDD CAD1 12 349 IPR047109 GO:0016616(InterPro)
Lac11g1844 355 SUPERFAMILY GroES-like 17 183 IPR011032 -
Lac11g1844 355 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1844 Lac-Chr11:33161640 Lac1g2761 Lac-Chr1:48760825 5.10E-100 dispersed
Lac11g1844 Lac-Chr11:33161640 Lac9g0322 Lac-Chr9:5203641 4.50E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1844 K00083 - csv:101211438 649.047