Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g1849 | ATGAATTTTGGGCTGAATCGTCTCCAGAATCACCATCTCGAGCCAAGAACTAGGCTCGATTTGATCATGGAGCCGCCGGAGCCGGTGGAGGAAGCTGGTTCCGCCGCCGTGGGAGTAGTGGAAGTGGAGAGGGAACACATGTTCGACAAGGTGGTCACGCCGAGTGATGTCGGGAAATTGAACCGGTTGGTCATTCCAAAGCAACACGCCGAGAGATTCTTCCCCTTAGATTCCTCCACCAACGACAAGGGTTTGCTCCTCAACTTCGAAGATCGCAACGGCAAATCATGGCGCTTCCGTTACTCTTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGTGACATCGTCTCATTCCAACGTGGGGTCGGTGATATTGGAAGAGATCGCCTTTACATTGACTGGCGCCGCCGCCCCGAACTCCCCATCGACCACCACCACCACCACCACTTTCCCACCACCCTCGGCATCCGACCGAGCATCGTCCTCCCCGCCGGTGCTACCGCTTGGGGGTCTCTCGTGTGGCGGCCACTCACCGCACCTGCAGCTGGATACCACCACTACCCAGCTACCGTAGCGCCGCGGGACCACACGCACTTGTCGCAGCAAAGAAACAACAACAACAACAACGGTAGTAATGTTATGTATGATTGGAATGGAGGGTGTTGTCCGTACGGATATGGGAGTGGTGTTGAAACATTTTCAAGGGGAAGCCGCAGATTAGGGGAAGAGTTGGAGATGGAGATGGAGATGGAGGTGGAAGGGAGGAGTAATAATCAGGTGCAGCAAGAGTACAGTAGTGGTGGTGGAGGTGGAGGTGGAGGTGGTTGTTCTTCAATGGTGGTGGTCCAAGAATTAAAAACAAGAACAAAGAGTAGTGAAGAAGATCAAGATACACCAGTGAAGAAATCAAGGCTGAGGCTTTTTGGTGTAAACATGGAGATGGAGTGTCCAATTTCATCTTCTTCTGAGGAATGTGACTTATTATTGTCTTCTTCTTCTTCTTCTAATTCAAACCCCAAAGCCACCACTCACTTCCAATTCCAATTGCCTTCAAATCCTTCTCATCATCATCAATCATGA | 1125 | 51.73 | MNFGLNRLQNHHLEPRTRLDLIMEPPEPVEEAGSAAVGVVEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDIGRDRLYIDWRRRPELPIDHHHHHHFPTTLGIRPSIVLPAGATAWGSLVWRPLTAPAAGYHHYPATVAPRDHTHLSQQRNNNNNNGSNVMYDWNGGCCPYGYGSGVETFSRGSRRLGEELEMEMEMEVEGRSNNQVQQEYSSGGGGGGGGGCSSMVVVQELKTRTKSSEEDQDTPVKKSRLRLFGVNMEMECPISSSSEECDLLLSSSSSSNSNPKATTHFQFQLPSNPSHHHQS | 374 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 33348978 | 33350102 | + | Lag0032487.1 | Lac11g1849 | 587707 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g1849 | 374 | CDD | B3_DNA | 46 | 135 | IPR003340 | GO:0003677(InterPro) | |
| Lac11g1849 | 374 | Gene3D | - | 41 | 165 | IPR015300 | - | |
| Lac11g1849 | 374 | Pfam | B3 DNA binding domain | 48 | 152 | IPR003340 | GO:0003677(InterPro) | |
| Lac11g1849 | 374 | SMART | B3_2 | 48 | 153 | IPR003340 | GO:0003677(InterPro) | |
| Lac11g1849 | 374 | MobiDBLite | consensus disorder prediction | 338 | 374 | - | - | |
| Lac11g1849 | 374 | MobiDBLite | consensus disorder prediction | 267 | 293 | - | - | |
| Lac11g1849 | 374 | ProSiteProfiles | B3 DNA-binding domain profile. | 48 | 153 | IPR003340 | GO:0003677(InterPro) | |
| Lac11g1849 | 374 | SUPERFAMILY | DNA-binding pseudobarrel domain | 45 | 154 | IPR015300 | - | |
| Lac11g1849 | 374 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 39 | 327 | IPR044800 | GO:0003700(InterPro) | |
| Lac11g1849 | 374 | FunFam | B3 domain-containing protein | 41 | 163 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2827 | Lac-Chr10:42821416 | Lac11g1849 | Lac-Chr11:33348978 | 3.60E-40 | dispersed | |
| Lac11g1849 | Lac-Chr11:33348978 | Lac5g2156 | Lac-Chr5:40128244 | 1.90E-57 | dispersed | |
| Lac11g1849 | Lac-Chr11:33348978 | Lac12g1184 | Lac-Chr12:16011459 | 7.80E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22936 | PF02362 | B3 | 5.20E-29 | CL0405 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g1849 | K09287 | - | csv:101211271 | 419.853 |