Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1876 ATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCATCGTGGGAAGTAAAATTTGTGGGGAGGCACCCTCCTGTGGATTTTCTGATGTGAAAAACAGTTCAAAGGATGCGAAGGAGCGATCTGCGTCCATGCGGAAGCTTTTCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACCCCGCGTCAATCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTTGCAGGAATTCTTGTTTACGAAGCTATTGTCCGACTAATCAACGGTCCAGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCTGCATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCATGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAGCATGGTCACGATGATCATAGGCATCACCATGGGATAAGTGTTACCACACACCACCACCACCACCACCACCATGAAGAAGGGGGAACTGCCATTGATGGTGGTAAGCATCATCACTCACACGAGGAATCAGTAACTGCACCCTTGCTCGATAGTTGCTGTGATGATGATTCACAAAAGGTTACCAAGACACAGAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCACGTACTCGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGTGGGGCAATCATTTGGTATAAACCTGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTCTGCACAACAATTCAAATGCTCCGAAACATCCTCGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGACGCAACAAAGCTCGAGAAGGGTCTGTGCGAGATGGATGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCCATAACTGTTGGAAAGGTTCTATTGGCATGCCATGTTATAGTAAAGCCAGAGGCAAATGCAGACATGGTATTGGACAAGGTTATAGAGTATATCAGAAGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAG 1263 45.92 MEVQNHDHGHIIEVCGDVQAVGPSIVGSKICGEAPSCGFSDVKNSSKDAKERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGGHEHGHDDHRHHHGISVTTHHHHHHHHEEGGTAIDGGKHHHSHEESVTAPLLDSCCDDDSQKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIVKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33868671 33869933 - Lag0032514.1 Lac11g1876 587734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1876 420 Gene3D Cation efflux protein transmembrane domain 55 340 IPR027469 -
Lac11g1876 420 MobiDBLite consensus disorder prediction 186 248 - -
Lac11g1876 420 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 342 IPR027469 -
Lac11g1876 420 Pfam Cation efflux family 59 341 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1876 420 MobiDBLite consensus disorder prediction 194 219 - -
Lac11g1876 420 MobiDBLite consensus disorder prediction 233 248 - -
Lac11g1876 420 NCBIfam cation diffusion facilitator family transporter 56 420 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g1876 420 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 27 419 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Lac11g1876 420 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 347 418 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1876 Lac-Chr11:33868671 Lac7g2764 Lac-Chr7:46808303 3.60E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1876 K14689 - csv:101213602 649.432