Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1876 | ATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCATCGTGGGAAGTAAAATTTGTGGGGAGGCACCCTCCTGTGGATTTTCTGATGTGAAAAACAGTTCAAAGGATGCGAAGGAGCGATCTGCGTCCATGCGGAAGCTTTTCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACCCCGCGTCAATCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTTGCAGGAATTCTTGTTTACGAAGCTATTGTCCGACTAATCAACGGTCCAGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCTGCATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCATGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAGCATGGTCACGATGATCATAGGCATCACCATGGGATAAGTGTTACCACACACCACCACCACCACCACCACCATGAAGAAGGGGGAACTGCCATTGATGGTGGTAAGCATCATCACTCACACGAGGAATCAGTAACTGCACCCTTGCTCGATAGTTGCTGTGATGATGATTCACAAAAGGTTACCAAGACACAGAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCACGTACTCGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGTGGGGCAATCATTTGGTATAAACCTGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTCTGCACAACAATTCAAATGCTCCGAAACATCCTCGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGACGCAACAAAGCTCGAGAAGGGTCTGTGCGAGATGGATGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCCATAACTGTTGGAAAGGTTCTATTGGCATGCCATGTTATAGTAAAGCCAGAGGCAAATGCAGACATGGTATTGGACAAGGTTATAGAGTATATCAGAAGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAG | 1263 | 45.92 | MEVQNHDHGHIIEVCGDVQAVGPSIVGSKICGEAPSCGFSDVKNSSKDAKERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGHAHSHGHSHGHGDHDHGHGGHEHGHDDHRHHHGISVTTHHHHHHHHEEGGTAIDGGKHHHSHEESVTAPLLDSCCDDDSQKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIVKPEANADMVLDKVIEYIRREYNISHVTIQIERQ | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33868671 | 33869933 | - | Lag0032514.1 | Lac11g1876 | 587734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1876 | 420 | Gene3D | Cation efflux protein transmembrane domain | 55 | 340 | IPR027469 | - | |
Lac11g1876 | 420 | MobiDBLite | consensus disorder prediction | 186 | 248 | - | - | |
Lac11g1876 | 420 | SUPERFAMILY | Cation efflux protein transmembrane domain-like | 53 | 342 | IPR027469 | - | |
Lac11g1876 | 420 | Pfam | Cation efflux family | 59 | 341 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1876 | 420 | MobiDBLite | consensus disorder prediction | 194 | 219 | - | - | |
Lac11g1876 | 420 | MobiDBLite | consensus disorder prediction | 233 | 248 | - | - | |
Lac11g1876 | 420 | NCBIfam | cation diffusion facilitator family transporter | 56 | 420 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g1876 | 420 | PANTHER | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER | 27 | 419 | IPR050681 | GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER) | |
Lac11g1876 | 420 | SUPERFAMILY | Cation efflux protein cytoplasmic domain-like | 347 | 418 | IPR036837 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1876 | Lac-Chr11:33868671 | Lac7g2764 | Lac-Chr7:46808303 | 3.60E-76 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1876 | K14689 | - | csv:101213602 | 649.432 |