Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1913 ATGGGCTGTGTTTCTTCTCATCTTCTTAATCACGACGACGAATTCTCCCAACTTGGAAGCTCTGCTCTCAGCCACCACATCGTCTCCCTCACTTCCACCACTTATGGCCTTCTTAACCTCGATCCGCCTTCCGCCTCCGCCCCTACTCCGCCGCCCAGGTTCACTTTTGGCTCTGTTTTCCCCACTCCCCTCTCTGAACCCAAGTCCCTTCGCTGCGAGCCGGAGGTTATCAATTCCTGGGAGCTCATGGATGGCCTCGATGCCGATAGCTTTCGATTCTCTCTTCTCCCTCAATCGAAACGCTTCGCTCTCAAAGACCCTGATTCCAACAAGGAGAATTCAAACCCCAACTGCCCGAATCAGATCGTCGAGTCCGCCGTCCTCCGATCGTCGCCTCGTGCTGCCGCCACGGCTACCGTGACGATACCCTCTTCGGTAAAAGATTTGCTTGATAGGTTCGAAATGCTCTGCCCACCAAGCGGGGAGAATCGTGTGGTGGTGTACACGACGACCCTACGTGGGATCAGAAAGACGTTCGAGGAGTGCAACGCGGTGAGAGCGGCGATCGAAGGTGCCGGAGTGCAAATCTGCGAGCGAGACGTGTCAATGGATCGCGGGTTCAGAGAGGAGCTAAAGGAATTGATGAAAGGGAGAGGGCAAGAAGCCATGGTTCCTCCAAGAGTGTTCATAAGAGGGAGGTACATTGGGAATGGTGAACAAGTATTGAAAATGGTGGAAGAAGGAGTTTTAGGGGAATTGCTTGAAGGGCTGCCCAAAATCATAGCTGGGTCTGTGTGTGAAGGGTGTGGGAATGCAAGGTTTCTGCCCTGTTTTCAGTGCAATGGGAGCTGTAAATTGGTGATGGCAGTGAAAAAAGAAGGGTTTCAAAAGCAAGGCCATGGCCATGGTAAGGCTGTGGTTGTCAAGTGCCCTGATTGCAATGAGAATGGCCTTGTTCTTTGCCCCATTTGTAGCTGA 978 52.56 MGCVSSHLLNHDDEFSQLGSSALSHHIVSLTSTTYGLLNLDPPSASAPTPPPRFTFGSVFPTPLSEPKSLRCEPEVINSWELMDGLDADSFRFSLLPQSKRFALKDPDSNKENSNPNCPNQIVESAVLRSSPRAAATATVTIPSSVKDLLDRFEMLCPPSGENRVVVYTTTLRGIRKTFEECNAVRAAIEGAGVQICERDVSMDRGFREELKELMKGRGQEAMVPPRVFIRGRYIGNGEQVLKMVEEGVLGELLEGLPKIIAGSVCEGCGNARFLPCFQCNGSCKLVMAVKKEGFQKQGHGHGKAVVVKCPDCNENGLVLCPICS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34505747 34506965 - Lag0032551.1 Lac11g1913 587771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1913 325 Gene3D Glutaredoxin 163 258 - -
Lac11g1913 325 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 24 324 - -
Lac11g1913 325 SUPERFAMILY Thioredoxin-like 157 255 IPR036249 -
Lac11g1913 325 CDD GRX_GRX_like 164 321 - -
Lac11g1913 325 Pfam Glutaredoxin 165 235 IPR002109 -
Lac11g1913 325 ProSiteProfiles Glutaredoxin domain profile. 153 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1913 K17479 - - csv:101222330 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1913 Lac-Chr11:34505747 Lac1g1446 Lac-Chr1:35170799 1.70E-38 dispersed
Lac10g2735 Lac-Chr10:41821074 Lac11g1913 Lac-Chr11:34505747 4.20E-27 transposed
Lac10g2854 Lac-Chr10:43073650 Lac11g1913 Lac-Chr11:34505747 6.60E-48 transposed
Lac11g1966 Lac-Chr11:35164600 Lac11g1913 Lac-Chr11:34505747 6.50E-34 transposed
Lac8g2276 Lac-Chr8:40979435 Lac11g1913 Lac-Chr11:34505747 2.80E-34 transposed
Lac11g1913 Lac-Chr11:34505747 Lac13g1157 Lac-Chr13:10169579 1.10E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g251 . . . . . . Bma07g01030 Bma14g00100 . . . Cma15g01318 . Car15g01185 . . . . . . . . . . . . . . . . . . . . . . Csa05g00161 Chy09g01336 . Blo03g00800 . Bda07g00154 . . Bpe11g00372 . . . . Cmo15g01382 . . . . . . Bhi12g00082 . . Lac11g1913 Hepe06g1434 . Lcy12g1515 Cla01g00143 Cam01g0148 Cec01g0144 Cco01g0150 Clacu01g0143 Cmu01g0143 Cre09g2363 Lsi09g00134 . . Cme09g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011679 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30