Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1940 ATGAGTTCCGCTTCGGATTTCATGTCTGGGAATTCTGAGGCCGATGATCGTGAGATTGTGGAGAAGGATCCAACTGGACGATATATTCGGTACGATGAGATTTTGGGTAAAGGCGCATTCAAGACAGTTTACAAAGCATTCGATGAAGTTGGTGGAATTGAAGTTGCTTGGGGCCAAGTGGACATTGAAGAGGTTTTGCAGTCACCAGAACAACTTCAAAGATTATATTCTGAGGTTCATTTGCTGAAGTCTCTGAAACATGAGAATATCATCAAGTTCTGTAGCTACTGGGTTGATGATAAGAACAAGACTATCAACATGATAACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACGTATTTGCATTGTCACTGCCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATTTTTGTCAATGGAAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCACGAAGCGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTTTATGATGAGGACTATAATGAACTTGTGGACATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCTCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGTTCATAGAGAAGTGTCTTGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTATTGAAAGATCCATTCCTTGCAACTGATAATTCGAAGGAGCATAGTTCTGAGCCTTCAAGGTTATTGAATGCACAGTTCAAATCAGTAAATCCTCCACTGCTGGCTACCAATCCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCAGTGACCTCATCTGTCAAAAGCAACAATGAAATTTCTCACTTTTCAACTCTTGAACTTCAGAGGCTTACTGAGAATAATGAATTGACGCTGAAAGGGGACATGACTGATCATAATACAATTTCATTCCATTTGCGCATTGCTGAACTATGTGGTAAATCGAAGAATATTCATTTTGCCTTCTTTCTTGATTCCGATACTGCTTTGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTTTCAAATGAAGATGCGACCGTCATAGCTAAATTGATAGATGAATTAATTGCCAAGTTTGTTCCCAGCTGGACACCATGTACAAATTATTGTCATGGACAAAATACTGCTCATAGTTGTTCTGAAACTCAAGAGGACAAGACCTTCGCTCCTCTCTTCTCTGAGCTGGTACTGTCATCTCCCTTGGTGGCTGCTGCTGGGAAAACTCCGACGCATTTGGGTGAGGTGGAAGATCAAGAAAACCCACAGACGATTATATCGTGTGCATCTCTGGACTACAATCACTCAACTATCTCAGATTACAGCATTGGAAAAGGATCAGAGTGTGGTGACCTCTGTCACCCTGAATGTGACAAAGCTTTTACTAGCAGTGGAACGATTGATTTAGATGTCGTTGGATCTATTCCGACAATGATGGATTTTGCAAAACCATCACTGATCTCCTCCTGCTCAGGAATGTCCAAAGAATTGAGTTTGTCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGACCACCATGATGAACTCAAGCTGGAGATTGATGCTATTGACTTGCAGTACCACCAGTGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTTCTGCTAATTGA 1887 41.44 MSSASDFMSGNSEADDREIVEKDPTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWGQVDIEEVLQSPEQLQRLYSEVHLLKSLKHENIIKFCSYWVDDKNKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHCHCPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATDNSKEHSSEPSRLLNAQFKSVNPPLLATNPMDIDHNCSKLSGSVTSSVKSNNEISHFSTLELQRLTENNELTLKGDMTDHNTISFHLRIAELCGKSKNIHFAFFLDSDTALAIALEMVEQLELSNEDATVIAKLIDELIAKFVPSWTPCTNYCHGQNTAHSCSETQEDKTFAPLFSELVLSSPLVAAAGKTPTHLGEVEDQENPQTIISCASLDYNHSTISDYSIGKGSECGDLCHPECDKAFTSSGTIDLDVVGSIPTMMDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHHDELKLEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKASAN 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34886319 34889180 - Lag0032578.1 Lac11g1940 587798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1940 628 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1940 628 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
Lac11g1940 628 Gene3D - 369 463 - -
Lac11g1940 628 CDD STKc_WNK 27 286 - -
Lac11g1940 628 FunFam probable serine/threonine-protein kinase WNK9 112 291 - -
Lac11g1940 628 SMART serkin_6 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1940 628 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
Lac11g1940 628 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1940 628 Gene3D Transferase(Phosphotransferase) domain 1 112 294 - -
Lac11g1940 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1940 628 SUPERFAMILY Protein kinase-like (PK-like) 30 311 IPR011009 -
Lac11g1940 628 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 457 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac11g1940 628 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 384 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1940 Lac-Chr11:34886319 Lac7g0117 Lac-Chr7:935475 5.50E-174 dispersed
Lac11g1940 Lac-Chr11:34886319 Lac12g2279 Lac-Chr12:39919600 2.40E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85761 PF00069 Pkinase 1.60E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1940 K08867 - csv:101207748 1052.74