Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1940 | ATGAGTTCCGCTTCGGATTTCATGTCTGGGAATTCTGAGGCCGATGATCGTGAGATTGTGGAGAAGGATCCAACTGGACGATATATTCGGTACGATGAGATTTTGGGTAAAGGCGCATTCAAGACAGTTTACAAAGCATTCGATGAAGTTGGTGGAATTGAAGTTGCTTGGGGCCAAGTGGACATTGAAGAGGTTTTGCAGTCACCAGAACAACTTCAAAGATTATATTCTGAGGTTCATTTGCTGAAGTCTCTGAAACATGAGAATATCATCAAGTTCTGTAGCTACTGGGTTGATGATAAGAACAAGACTATCAACATGATAACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACGTATTTGCATTGTCACTGCCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATTTTTGTCAATGGAAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCACGAAGCGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTTTATGATGAGGACTATAATGAACTTGTGGACATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCTCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGTTCATAGAGAAGTGTCTTGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTATTGAAAGATCCATTCCTTGCAACTGATAATTCGAAGGAGCATAGTTCTGAGCCTTCAAGGTTATTGAATGCACAGTTCAAATCAGTAAATCCTCCACTGCTGGCTACCAATCCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCAGTGACCTCATCTGTCAAAAGCAACAATGAAATTTCTCACTTTTCAACTCTTGAACTTCAGAGGCTTACTGAGAATAATGAATTGACGCTGAAAGGGGACATGACTGATCATAATACAATTTCATTCCATTTGCGCATTGCTGAACTATGTGGTAAATCGAAGAATATTCATTTTGCCTTCTTTCTTGATTCCGATACTGCTTTGGCAATTGCTTTGGAGATGGTTGAACAACTTGAACTTTCAAATGAAGATGCGACCGTCATAGCTAAATTGATAGATGAATTAATTGCCAAGTTTGTTCCCAGCTGGACACCATGTACAAATTATTGTCATGGACAAAATACTGCTCATAGTTGTTCTGAAACTCAAGAGGACAAGACCTTCGCTCCTCTCTTCTCTGAGCTGGTACTGTCATCTCCCTTGGTGGCTGCTGCTGGGAAAACTCCGACGCATTTGGGTGAGGTGGAAGATCAAGAAAACCCACAGACGATTATATCGTGTGCATCTCTGGACTACAATCACTCAACTATCTCAGATTACAGCATTGGAAAAGGATCAGAGTGTGGTGACCTCTGTCACCCTGAATGTGACAAAGCTTTTACTAGCAGTGGAACGATTGATTTAGATGTCGTTGGATCTATTCCGACAATGATGGATTTTGCAAAACCATCACTGATCTCCTCCTGCTCAGGAATGTCCAAAGAATTGAGTTTGTCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGACCACCATGATGAACTCAAGCTGGAGATTGATGCTATTGACTTGCAGTACCACCAGTGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTTCTGCTAATTGA | 1887 | 41.44 | MSSASDFMSGNSEADDREIVEKDPTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWGQVDIEEVLQSPEQLQRLYSEVHLLKSLKHENIIKFCSYWVDDKNKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHCHCPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATDNSKEHSSEPSRLLNAQFKSVNPPLLATNPMDIDHNCSKLSGSVTSSVKSNNEISHFSTLELQRLTENNELTLKGDMTDHNTISFHLRIAELCGKSKNIHFAFFLDSDTALAIALEMVEQLELSNEDATVIAKLIDELIAKFVPSWTPCTNYCHGQNTAHSCSETQEDKTFAPLFSELVLSSPLVAAAGKTPTHLGEVEDQENPQTIISCASLDYNHSTISDYSIGKGSECGDLCHPECDKAFTSSGTIDLDVVGSIPTMMDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHHDELKLEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKASAN | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 34886319 | 34889180 | - | Lag0032578.1 | Lac11g1940 | 587798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1940 | 628 | Pfam | Protein kinase domain | 32 | 286 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1940 | 628 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 110 | - | - | |
Lac11g1940 | 628 | Gene3D | - | 369 | 463 | - | - | |
Lac11g1940 | 628 | CDD | STKc_WNK | 27 | 286 | - | - | |
Lac11g1940 | 628 | FunFam | probable serine/threonine-protein kinase WNK9 | 112 | 291 | - | - | |
Lac11g1940 | 628 | SMART | serkin_6 | 29 | 286 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1940 | 628 | FunFam | Probable serine/threonine-protein kinase WNK1 | 14 | 110 | - | - | |
Lac11g1940 | 628 | ProSiteProfiles | Protein kinase domain profile. | 29 | 286 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1940 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 294 | - | - | |
Lac11g1940 | 628 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 153 | 165 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g1940 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 30 | 311 | IPR011009 | - | |
Lac11g1940 | 628 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 15 | 457 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Lac11g1940 | 628 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 384 | 428 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1940 | Lac-Chr11:34886319 | Lac7g0117 | Lac-Chr7:935475 | 5.50E-174 | dispersed | |
Lac11g1940 | Lac-Chr11:34886319 | Lac12g2279 | Lac-Chr12:39919600 | 2.40E-124 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85761 | PF00069 | Pkinase | 1.60E-50 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1940 | K08867 | - | csv:101207748 | 1052.74 |