Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1941 ATGTCCTTGCCGGATATGGTTGATGTTGCTGATAAATTAGCCTATTTCCAAGCGATTACAGGCTTAGAAGATCCAGAAATCTGCACCGAAATCCTTGCCGCCCACGGTTGGGACCTCGAACGGGCTGTTTCTTCTTTTACTGCCACCAATTCGGAATCCTCTGCTTCCGCCGCCGCCGATCATGGTGGTGGCGACGCCCATTTGGACCCTGCGACGCGTCAAATCCTCGAGAGATCGGAACCGCAAGAAAATGCCGCTCCGGCCCCTAGTTTGGCGTGGAGAATTATTACGCTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCAGGTGCTGTTGGTCTTGGATTATGGGCTGCTGGTGGTATTCTTTCGTATTCTCTTGGTGTGATCGGTTTGGGTTCTGGTTCTGGCCGGAACACTGAGTCGTCTGCTCGGTTAGTTTCTGTGTCTGCTGCGGCGTCGGAGGCTATTGATTTTGTGTCGGCGTTTGAGAGGGATTTTGGGACGACTAGGCCGAATTTTGTGGGAGAAGGGTTCATGGACGCATTGCAGCGTTCGAGGAATGCGTTTAAGCTTTTGTTTGTTTACCTGCACTCTCCTGATCATCCGGATACGCCGTTGTTCTGCGAGAGGACCTTGTGTTCGGAGACTGTTGCAGCGTTTGTGAATGAGAATTTTGTTTCGTGGGGAGGGAGTATTCGCGCAAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCTTCGAGATACCCTTTTTGTGCTGTGGTTATGGCAGCTACAAATCAGAGGATCGCATTGCTTCAGCAGGTTGAGGGACCAAAGACTGCTGAAGAAATGCTAGTGATTCTACAGAGAGTTCTTGAAGAAAGTGCTCCTGTTCTGGTTTCAGCTAGGCTTGATGCAGAAGAAAGAAGAAATAACATGCGATTGAGGGAGGAACAAGATGCTGCTTACAGAGCAGCACTTGAAGCAGATCAAGCCAGGGAACGACAAAGAAGGGAGGAGCAAGAGCGTCTGGAAAGGGAAGCCGCTGAAGCCGAGAGGAAGAGGAAAGAGGAAGAAGAGGCTCGTGAGAGAGCTGCTCGTGAAGCTGCAGAAAGAGAGGCTGCTTTAGCTAGAATGCGGCAGGAGAAAGCAATGTCACTTGGTGCTGAACCCGAAAAAGGGCCTAATGTTACACAAGTCTTGGTGCGGTTCCCTACTGGAGAACGCAAGGATAGGAGGTTTCACAGTACTGCTTCGATCCAAACTCTCTACGACTACGTCGACTCCTTGGGTTGTCTGGCCGTTGATAGTTATAATCTGGTGTCAAACTTCCCTCGAGTTGTTTACGGTGCCGAGAAACTCTCGTTGTCCTTGAAAGAAGCTGGACTGCATCCTCAGGCCAGTCTCTTTGTGGAGCTAACCTCGTGA 1419 49.75 MSLPDMVDVADKLAYFQAITGLEDPEICTEILAAHGWDLERAVSSFTATNSESSASAAADHGGGDAHLDPATRQILERSEPQENAAPAPSLAWRIITLPISVISGSLGLVSGAVGLGLWAAGGILSYSLGVIGLGSGSGRNTESSARLVSVSAAASEAIDFVSAFERDFGTTRPNFVGEGFMDALQRSRNAFKLLFVYLHSPDHPDTPLFCERTLCSETVAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESAPVLVSARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKRKEEEEARERAAREAAEREAALARMRQEKAMSLGAEPEKGPNVTQVLVRFPTGERKDRRFHSTASIQTLYDYVDSLGCLAVDSYNLVSNFPRVVYGAEKLSLSLKEAGLHPQASLFVELTS 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34905600 34916547 - Lag0032579.1 Lac11g1941 587799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1941 472 Coils Coil 321 379 - -
Lac11g1941 472 CDD UAS 176 291 - -
Lac11g1941 472 Pfam Fas-associated factor 1 161 236 IPR049483 -
Lac11g1941 472 SUPERFAMILY Ubiquitin-like 353 469 IPR029071 -
Lac11g1941 472 Gene3D - 393 471 - -
Lac11g1941 472 SMART ubx_3 388 470 IPR001012 GO:0005515(InterPro)
Lac11g1941 472 Pfam UBX domain 390 469 IPR001012 GO:0005515(InterPro)
Lac11g1941 472 Gene3D Glutaredoxin 144 295 - -
Lac11g1941 472 PANTHER FAS-ASSOCIATED PROTEIN 12 469 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Lac11g1941 472 Pfam UBA-like domain 11 52 - -
Lac11g1941 472 Gene3D - 7 57 - -
Lac11g1941 472 SUPERFAMILY Thioredoxin-like 155 299 IPR036249 -
Lac11g1941 472 CDD UBA_FAF 16 47 - -
Lac11g1941 472 CDD UBX 397 469 - -
Lac11g1941 472 MobiDBLite consensus disorder prediction 326 376 - -
Lac11g1941 472 SMART 45neu3 160 286 IPR006577 -
Lac11g1941 472 MobiDBLite consensus disorder prediction 326 377 - -
Lac11g1941 472 ProSiteProfiles UBX domain profile. 390 468 IPR001012 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1941 K18726 - - csv:101203982 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0471 Lac-Chr10:3654151 Lac11g1941 Lac-Chr11:34905600 2.80E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37