Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1970 | ATGAGTTATCATGGTGGAGATTCGTATACGCAGTCTTGTGTTTCGGCTCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGAGCTTGTGCCGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCAAAGATTCTCTGTCGTGTGATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCTCAAATAACTTTAATGCCGGAATCAAATCAGAATGAGCCTAAAAGTCTAGATCCATGCCCTCCTGAGCCAGCTAGACCAGTAGTTCATTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGTTTTTCTGTCCTCCGAAAACATGCTAATGAGTGCCTACCTCCTTTGGACATGACTCAAGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTCCATGGATATGAGTGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCACCTACTAACGACTGGGTGGAGTACATTTGTTACTTCCAAACGATTATCTGCTGGAGATTCTTTTGTATTCTTGAGGGGAGACAATGGACAATTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCATCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTTGCAACTGCATCTCATGCTGTTACAACCCAAACCCGCTTTGTAGTCTATTATAAACCCAGGACTTGTCAGTACATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAGTTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACAATAATTGGAGCTGGAGATATTTCACCTCATTGGACTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAAATCTATCTCAACCTGTTTCAAAAAACAAAAGGCCTAGACAACCAACCGAAACTCCAGCTCTTGATGGTGCTGATTTGACTAAGCCAGCACATTGGGATTCTGGATTGGCACAGTCTCATGATGGTAAACAAAGCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCATCATAGAGAGACAGATACTATCAGCAACAGCACATGTGTATCAAGAACACCAACTGATGGGACCTGGTTATCTTCTACCCAATCCAATAGTTATAAACACCCGGCAAATGACATGGTGCAGGACTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACTTTCACCCTCTCAATTGGTTAAGTTAAGTGATGATCAAACACTTGATCCCAATGAAAGTGGGAGGAAAGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGACCTCAATCATTTGTCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGCATATCTAGCGACACAGACGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCTGATCCAAAATCTGACAACTTGGAGGTTTCTGTAGAAAGAAAGTCAGAACCATTACAAGCATCTCTGAAGGAGACTCAGAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACCTAACCATCCTAGAAGGTTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATCGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCCTGGGAAGAATTTTGTAACATGGTGAGGAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGCTGATGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA | 2085 | 44.17 | MSYHGGDSYTQSCVSAQGCGRDDLYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGQLRVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQYIISLNKYLEAVNNSFSVGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWTNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTNLSQPVSKNKRPRQPTETPALDGADLTKPAHWDSGLAQSHDGKQSSNAAESRKGENNELCHHRETDTISNSTCVSRTPTDGTWLSSTQSNSYKHPANDMVQDYKTVPGCGWSFLSGLSPSQLVKLSDDQTLDPNESGRKGETVASCRLFGIDLNHLSKLPAEKASSQPSSISSDTDGRISTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEADGAVVIPDSPAI | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 35217293 | 35222491 | + | Lag0032608.1 | Lac11g1970 | 587828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1970 | 694 | Gene3D | - | 126 | 231 | IPR015300 | - | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 570 | 586 | - | - | |
Lac11g1970 | 694 | FunFam | Auxin response factor | 127 | 231 | - | - | |
Lac11g1970 | 694 | Gene3D | - | 290 | 363 | - | - | |
Lac11g1970 | 694 | Pfam | AUX/IAA family | 629 | 661 | IPR033389 | - | |
Lac11g1970 | 694 | Pfam | AUX/IAA family | 573 | 619 | IPR033389 | - | |
Lac11g1970 | 694 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677(InterPro) | |
Lac11g1970 | 694 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - | |
Lac11g1970 | 694 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 23 | 672 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac11g1970 | 694 | SUPERFAMILY | CAD & PB1 domains | 577 | 659 | - | - | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 523 | 586 | - | - | |
Lac11g1970 | 694 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 401 | 416 | - | - | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 363 | 377 | - | - | |
Lac11g1970 | 694 | Gene3D | - | 578 | 671 | - | - | |
Lac11g1970 | 694 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac11g1970 | 694 | FunFam | Auxin response factor | 578 | 671 | - | - | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 363 | 426 | - | - | |
Lac11g1970 | 694 | FunFam | Auxin response factor | 290 | 361 | - | - | |
Lac11g1970 | 694 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lac11g1970 | 694 | ProSiteProfiles | PB1 domain profile. | 583 | 664 | IPR053793 | - | |
Lac11g1970 | 694 | MobiDBLite | consensus disorder prediction | 523 | 555 | - | - | |
Lac11g1970 | 694 | Pfam | B3 DNA binding domain | 129 | 230 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1970 | Lac-Chr11:35217293 | Lac12g0970 | Lac-Chr12:10923180 | 1.00E-200 | dispersed | |
Lac13g2278 | Lac-Chr13:35947543 | Lac11g1970 | Lac-Chr11:35217293 | 5.20E-178 | transposed | |
Lac11g1970 | Lac-Chr11:35217293 | Lac5g2249 | Lac-Chr5:41182364 | 5.80E-241 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22941 | PF02362 | B3 | 1.60E-21 | CL0405 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1970 | K14486 | - | csv:101209208 | 1246.49 |