Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1970 ATGAGTTATCATGGTGGAGATTCGTATACGCAGTCTTGTGTTTCGGCTCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGAGCTTGTGCCGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCAAAGATTCTCTGTCGTGTGATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCTCAAATAACTTTAATGCCGGAATCAAATCAGAATGAGCCTAAAAGTCTAGATCCATGCCCTCCTGAGCCAGCTAGACCAGTAGTTCATTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGTTTTTCTGTCCTCCGAAAACATGCTAATGAGTGCCTACCTCCTTTGGACATGACTCAAGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTCCATGGATATGAGTGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCACCTACTAACGACTGGGTGGAGTACATTTGTTACTTCCAAACGATTATCTGCTGGAGATTCTTTTGTATTCTTGAGGGGAGACAATGGACAATTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCATCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTTGCAACTGCATCTCATGCTGTTACAACCCAAACCCGCTTTGTAGTCTATTATAAACCCAGGACTTGTCAGTACATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAGTTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACAATAATTGGAGCTGGAGATATTTCACCTCATTGGACTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAAATCTATCTCAACCTGTTTCAAAAAACAAAAGGCCTAGACAACCAACCGAAACTCCAGCTCTTGATGGTGCTGATTTGACTAAGCCAGCACATTGGGATTCTGGATTGGCACAGTCTCATGATGGTAAACAAAGCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCATCATAGAGAGACAGATACTATCAGCAACAGCACATGTGTATCAAGAACACCAACTGATGGGACCTGGTTATCTTCTACCCAATCCAATAGTTATAAACACCCGGCAAATGACATGGTGCAGGACTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACTTTCACCCTCTCAATTGGTTAAGTTAAGTGATGATCAAACACTTGATCCCAATGAAAGTGGGAGGAAAGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGACCTCAATCATTTGTCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGCATATCTAGCGACACAGACGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCTGATCCAAAATCTGACAACTTGGAGGTTTCTGTAGAAAGAAAGTCAGAACCATTACAAGCATCTCTGAAGGAGACTCAGAGTAGCTCAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACCTAACCATCCTAGAAGGTTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATCGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCCTGGGAAGAATTTTGTAACATGGTGAGGAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGCTGATGGGGCAGTAGTAATCCCCGACTCCCCTGCAATTTGA 2085 44.17 MSYHGGDSYTQSCVSAQGCGRDDLYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGQLRVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQYIISLNKYLEAVNNSFSVGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWTNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTNLSQPVSKNKRPRQPTETPALDGADLTKPAHWDSGLAQSHDGKQSSNAAESRKGENNELCHHRETDTISNSTCVSRTPTDGTWLSSTQSNSYKHPANDMVQDYKTVPGCGWSFLSGLSPSQLVKLSDDQTLDPNESGRKGETVASCRLFGIDLNHLSKLPAEKASSQPSSISSDTDGRISTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSSSTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEADGAVVIPDSPAI 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35217293 35222491 + Lag0032608.1 Lac11g1970 587828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1970 694 Gene3D - 126 231 IPR015300 -
Lac11g1970 694 MobiDBLite consensus disorder prediction 570 586 - -
Lac11g1970 694 FunFam Auxin response factor 127 231 - -
Lac11g1970 694 Gene3D - 290 363 - -
Lac11g1970 694 Pfam AUX/IAA family 629 661 IPR033389 -
Lac11g1970 694 Pfam AUX/IAA family 573 619 IPR033389 -
Lac11g1970 694 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Lac11g1970 694 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Lac11g1970 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 672 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac11g1970 694 SUPERFAMILY CAD & PB1 domains 577 659 - -
Lac11g1970 694 MobiDBLite consensus disorder prediction 523 586 - -
Lac11g1970 694 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Lac11g1970 694 MobiDBLite consensus disorder prediction 401 416 - -
Lac11g1970 694 MobiDBLite consensus disorder prediction 363 377 - -
Lac11g1970 694 Gene3D - 578 671 - -
Lac11g1970 694 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac11g1970 694 FunFam Auxin response factor 578 671 - -
Lac11g1970 694 MobiDBLite consensus disorder prediction 363 426 - -
Lac11g1970 694 FunFam Auxin response factor 290 361 - -
Lac11g1970 694 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Lac11g1970 694 ProSiteProfiles PB1 domain profile. 583 664 IPR053793 -
Lac11g1970 694 MobiDBLite consensus disorder prediction 523 555 - -
Lac11g1970 694 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1970 Lac-Chr11:35217293 Lac12g0970 Lac-Chr12:10923180 1.00E-200 dispersed
Lac13g2278 Lac-Chr13:35947543 Lac11g1970 Lac-Chr11:35217293 5.20E-178 transposed
Lac11g1970 Lac-Chr11:35217293 Lac5g2249 Lac-Chr5:41182364 5.80E-241 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22941 PF02362 B3 1.60E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1970 K14486 - csv:101209208 1246.49