Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1979 ATGGCTGGCTCCTGGAGAGCTCGAGGAGGGTCTTTGATCGTGCTGGCGATCGTTTTCTTCGGATGCCTGTTCGCAATTTCCATCGCGAAAGAGGAAGCAACTAAATTAGGGACTGTCATTGGGATAGATTTGGGAACAACTTATTCGTGTGTTGGAGTCTACAAGAACGGTCATGTAGAAATTATAGCGAATGACCAAGGAAACCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAACCCTGAAAGGACAGTCTTCGATGTCAAGAGACTTATCGGTAGAAAGTTTGATGATAAAGAGGTCCAGAAAGACATGAAGCTTGTTCCTTACAAGATTGTGAATAAGGATGGAAAGCCTTACATTCAAGTGAAGATCAAGGATGGTGAGACCAAGGTTTTTAGCCCTGAGGAAGTCAGTGCTATGGTTCTCACAAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAAATCAAGGATGCCGTCGTCACTGTTCCAGCTTACTTCAACGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGGATCATCAATGAGCCCACTGCGGCTGCCATTGCCTATGGTTTGGACAAGAAAGGTGGCGAGAAGAACATTCTTGTATTTGATCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGATAATGGTGTTTTTGAGGTTCTTGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACATGAGAATTATGGAATACTTCATCAAATTGATCAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGAAGGGAATGTGAGCGTGCCAAGAGGGCCTTGAGTAGCCAGCACCAGGTCCGCGTTGAGATTGAATCCCTCTTTGAGGGTACCGACTTCTCTGAGCCATTGACCAGAGCTCGATTTGAGGAGTTGAACAACGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAGGCCATGGAAGATGCAGGTTTAGAGAAGAACCAAATCGACGAGATTGTCCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAGGACTACTTTGAAGGCAAGGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCCTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGATATCCTTCTTCTTGATGTTGCCCCTCTTACCCTTGGAATTGAGACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACCAAGAAATCTCAGGTCTTCACCACTTACCAGGATCAGCAGACCACCGTTTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAAGACTGCAGGAACCTTGGGAAGTTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTCGATGCCAATGGTATCCTGAACGTTAAGGCCGAAGACAAGGGCACTGGTAAATCCGAGAAGATCACCATCACCAACGACAAGGGTCGGTTGAGCCAGGAGGAGATTGACCGGATGGTTCGCGAAGCCGAGGAGTTCGCCGAGGAAGACAAGAAGGTGAAGGAGAGAATTGACGCCCGCAACAGCCTGGAAACCTACATCTACAACATGAAAAACCAGATCAATGACAAGGACAAGCTTGCTGACAAGCTTGAGTCTGATGAGAAGGACAAGATCGAGACCGCCGTTAAGGATGCTCTCGAATGGCTCGACGACAACCAGAGCGCCGAGAAGGAAGACTACGAGGAGAAGCTCAAGGAGGTCGAGGCCGTCTGCAACCCCATCATCACCGCTGTTTACCAGAGGTCTGGTGGCGCCCCCGGTGGCGAGCCGACCGAAGATGACGAGTCTCATGATGAGCTCTAA 2001 48.73 MAGSWRARGGSLIVLAIVFFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEVSAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDMRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFEGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKDKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGEPTEDDESHDEL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35319161 35323016 + Lag0032617.1 Lac11g1979 587837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1979 666 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 576 IPR029047 -
Lac11g1979 666 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 570 653 IPR029048 -
Lac11g1979 666 ProSitePatterns Heat shock hsp70 proteins family signature 2. 230 243 IPR018181 -
Lac11g1979 666 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 572 IPR029047 -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 396 416 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 236 246 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 423 442 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 504 520 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 88 96 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 38 51 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 66 78 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 364 380 - -
Lac11g1979 666 PRINTS 70kDa heat shock protein signature 176 196 - -
Lac11g1979 666 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lac11g1979 666 FunFam Heat shock protein 70 40 231 - -
Lac11g1979 666 Coils Coil 548 568 - -
Lac11g1979 666 FunFam Heat shock 70 kDa 418 572 - -
Lac11g1979 666 PANTHER HSC70CB, ISOFORM G-RELATED 37 648 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Lac11g1979 666 Pfam Hsp70 protein 39 646 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lac11g1979 666 FunFam Heat shock 70 kDa 262 345 - -
Lac11g1979 666 Gene3D - 222 396 - -
Lac11g1979 666 Gene3D - 573 647 IPR029048 -
Lac11g1979 666 ProSitePatterns Heat shock hsp70 proteins family signature 3. 367 381 IPR018181 -
Lac11g1979 666 FunFam Luminal-binding protein 5 572 647 - -
Lac11g1979 666 SUPERFAMILY Actin-like ATPase domain 224 415 IPR043129 -
Lac11g1979 666 Coils Coil 286 306 - -
Lac11g1979 666 Gene3D - 40 411 - -
Lac11g1979 666 Coils Coil 616 636 - -
Lac11g1979 666 SUPERFAMILY Actin-like ATPase domain 37 221 IPR043129 -
Lac11g1979 666 ProSitePatterns Heat shock hsp70 proteins family signature 1. 42 49 IPR018181 -
Lac11g1979 666 Gene3D Actin; Chain A, domain 4 262 345 - -
Lac11g1979 666 MobiDBLite consensus disorder prediction 645 666 - -
Lac11g1979 666 Coils Coil 582 602 - -
Lac11g1979 666 CDD HSPA5-like_NBD 37 411 IPR042050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1979 Lac-Chr11:35319161 Lac3g0230 Lac-Chr3:1615866 2.20E-229 dispersed
Lac11g1979 Lac-Chr11:35319161 Lac8g2506 Lac-Chr8:42909906 1.70E-229 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1979 K09490 - csv:101207505 1276.54