Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1990 ATGCCATTGCTCCGACCCACCGCCGCCATGACCTTGCCGGAGGTCTTCTCCCCCCGGTTGCCCGATAGGGGTCCGGTTATTCCGGTCAGCAGTCTCGTCAAGTTCCTCGAGCGTCTTCAGGTTGTGGCGCTCGACTCCTTCGGTAAAGGGGATTTCGATCTTAAATACTATGTCGATTTGTCGCTGAAATTCGATTTGAATTCTACCGAGAGAGCGTTCGATGCCCTTGGGCGATCCTCCAATGGCTCTGTGCCGGCGGAGGATTTGAAGGCGTTTATTAGAGAGTATTTCAATAGTGCTGGCTCCGATTTGGTGTATTCCGACCCGGTGGATTTTCTCCCTCAGCCTGTGGGGTTTTTGCCGAAGGTGGAGAATGCGGAGGTTAGAGCTTGGGCTTTGGATATTCATAAATTCTGGAAGAATCTTAGCCGGAGAGCCTCCGATGATCTCCTTCATCGGCCGGATACCCACACTCTGTTACCGTTGCCGGAGCCCTGCGTCATTCCGGGTTCCAGATTCCGGGAAGTTTACTATTGGGATTCATATTGGATTATCAGAGGTTTGTTAGCAAGTAAAATGTATGAAACTGCAAAGGGAATTGTTATCAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCTAGAGTTTATTACACTAACAGAAGTCAGCCTCCCCTCTTGAGTTCCATGGTTTATGACATATACCTTAGGACACGGGATTTAGAGTTTGTGAGTAATGCACTCCCAGCTTTGATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCAATGCTCCTGGTGGAAATCATTCTTTATCTAGGTACTATGCAATGTGGAACGAACCGCGACCTGAATCTTCGCTGCTGGATGAGAAACTTGCCTCAAAGTTTGTGAGTAACTATGAAAAGCAGCAACTATACCGAGAGATCGCATCGGCCGCGGAATCTGGTTGGGATTTCAGTTCAAGATGGATGAGGGATCAGACGGACTTATCAACATTGGCTACAACTTCAATCTTGCCAGTTGATCTCAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATCTGGCAAGAGCTGTTGGAGATTATGGCACTGCAGAGTACTTTTTGGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTCGTTAATGGCTCTTGCAACGTTGCCCATACATGGGATGCTCGGAACCAGAATCAGAACATATTTGCTTCAAACTTCGTTCCTTTGTGGATCGAATCATTCTACTCCGATAGCAGACAGATGAAGAAAGTCTTGAAAAGCTTACGGAACTCAGGCTTGCTGTGCAATGCCGGGATTGCAACTTCAACAATCAACTCAGGAGAACAATGGGATTTCCCGAACGGTTGGGCGCCGATTCAGCACATGATCGTCGAGGGACTGGCGAGATCCGAACTGAAAGAAGCAAGAGCATTGGCTAAGGATATCGCCGCGAGATGGCTCCGAACCAACTATGTAGCTTACAAGAAAACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGCAGGTGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCTTTCCTTGAAGAGTTTGGATGGCCTGAAGATCAAAAGATTGACTGCTACTTAACTTCTTAA 1737 46.0 MPLLRPTAAMTLPEVFSPRLPDRGPVIPVSSLVKFLERLQVVALDSFGKGDFDLKYYVDLSLKFDLNSTERAFDALGRSSNGSVPAEDLKAFIREYFNSAGSDLVYSDPVDFLPQPVGFLPKVENAEVRAWALDIHKFWKNLSRRASDDLLHRPDTHTLLPLPEPCVIPGSRFREVYYWDSYWIIRGLLASKMYETAKGIVINLISMIDEFGHVLNGARVYYTNRSQPPLLSSMVYDIYLRTRDLEFVSNALPALIKEHKFWNSGFHSITVNAPGGNHSLSRYYAMWNEPRPESSLLDEKLASKFVSNYEKQQLYREIASAAESGWDFSSRWMRDQTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYGTAEYFLEASLVRKKTINSIFWNSEKGQWLDYWLVNGSCNVAHTWDARNQNQNIFASNFVPLWIESFYSDSRQMKKVLKSLRNSGLLCNAGIATSTINSGEQWDFPNGWAPIQHMIVEGLARSELKEARALAKDIAARWLRTNYVAYKKTGYMHEKYDVQKCGDFGAGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35432132 35435200 - Lag0032628.1 Lac11g1990 587848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1990 578 Pfam Trehalase 52 565 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 280 297 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 390 406 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 315 332 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 347 364 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 548 561 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 468 484 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PRINTS Glycosyl hydrolase family 37 signature 211 229 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lac11g1990 578 PANTHER TREHALASE 38 574 IPR001661 GO:0004555(PANTHER)|GO:0004555(InterPro)|GO:0005991(InterPro)|GO:0005993(PANTHER)
Lac11g1990 578 SUPERFAMILY Six-hairpin glycosidases 52 567 IPR008928 GO:0005975(InterPro)
Lac11g1990 578 Gene3D - 47 574 IPR012341 GO:0005975(InterPro)
Lac11g1990 578 ProSitePatterns Trehalase signature 2. 475 484 IPR018232 GO:0004555(InterPro)|GO:0005991(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1990 K01194 - - csv:101208719 1040.8
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g1990 . 22 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 9.1e-193 671.0
Lac12g0751 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1387.5
Lac1g3435 . 1 800 Trehalose Biosynthesis Gene Families AT1G06410 72.9 0.0e+00 1251.5
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1151.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.3 0.0e+00 1137.5
Lac13g0218 . 147 962 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1086.2
Lac3g0693 . 1 847 Trehalose Biosynthesis Gene Families AT1G06410 59.1 2.3e-300 1028.9
Lac2g1136 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.9 1.6e-248 856.3
Lac10g1001 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 5.5e-241 831.2
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G23870 75.4 0.0e+00 1328.9
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1206.8
Lac13g1298 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.3 0.0e+00 1120.1
Lac5g0203 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.1 0.0e+00 1114.0
Lac12g0751 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1099.3
Lac1g3435 . 5 801 Trehalose Biosynthesis Gene Families AT1G23870 59.5 1.3e-298 1023.1
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1308.9
Lac3g0693 . 1 840 Trehalose Biosynthesis Gene Families AT1G60140 67.5 0.0e+00 1204.1
Lac13g1298 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.5 0.0e+00 1086.6
Lac5g0203 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1085.1
Lac12g0751 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.6e-312 1069.3
Lac1g3435 . 6 805 Trehalose Biosynthesis Gene Families AT1G60140 58.8 9.0e-292 1000.3
Lac13g1298 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1411.0
Lac5g0203 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.1 0.0e+00 1271.5
Lac12g0751 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1144.0
Lac13g0218 . 147 960 Trehalose Biosynthesis Gene Families AT1G68020 65.0 0.0e+00 1109.0
Lac3g0693 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Lac1g3435 . 2 801 Trehalose Biosynthesis Gene Families AT1G68020 62.0 0.0e+00 1075.8
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G70290 69.0 0.0e+00 1174.8
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 64.8 0.0e+00 1106.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.2 1.2e-293 1006.5
Lac12g0751 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.1e-291 1000.0
Lac5g0203 . 77 938 Trehalose Biosynthesis Gene Families AT1G70290 57.0 8.2e-287 983.8
Lac1g3435 . 6 804 Trehalose Biosynthesis Gene Families AT1G70290 55.9 9.2e-270 927.2
Lac2g1136 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1473.4
Lac10g1001 . 1 925 Trehalose Biosynthesis Gene Families AT1G78580 73.7 0.0e+00 1368.6
Lac3g2016 . 1 85 Trehalose Biosynthesis Gene Families AT1G78580 89.4 3.9e-38 157.9
Lac13g0218 . 153 962 Trehalose Biosynthesis Gene Families AT2G18700 61.9 6.0e-312 1067.4
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.9e-298 1021.1
Lac3g0693 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.4 3.5e-296 1015.0
Lac12g0751 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.4 1.5e-291 999.6
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 4.6e-288 988.0
Lac1g3435 . 1 797 Trehalose Biosynthesis Gene Families AT2G18700 58.3 9.3e-281 963.8
Lac5g0203 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.7 0.0e+00 1384.0
Lac13g1298 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1264.2
Lac12g0751 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1161.0
Lac13g0218 . 148 962 Trehalose Biosynthesis Gene Families AT4G17770 65.1 0.0e+00 1135.6
Lac3g0693 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 61.8 0.0e+00 1091.6
Lac1g3435 . 3 793 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1078.2
Lac2g1136 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.2 4.2e-304 1041.2
Lac10g1001 . 87 919 Trehalose Biosynthesis Gene Families AT4G27550 59.8 5.3e-291 997.7
Lac2g1136 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.1 0.0e+00 1473.4
Lac10g1001 . 1 925 Trehalose Biosynthesis Gene Families AT1G78580 73.7 0.0e+00 1368.6
Lac3g2016 . 1 85 Trehalose Biosynthesis Gene Families AT1G78580 89.4 3.9e-38 157.9
Lac2g1136 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 65.9 1.6e-248 856.3
Lac10g1001 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 5.5e-241 831.2
Lac2g1136 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.0 3.0e-193 672.9
Lac10g1001 . 88 606 Trehalose Biosynthesis Gene Families AT1G17000 61.1 1.7e-188 657.1
Lac2g1136 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.2 4.2e-304 1041.2
Lac10g1001 . 87 919 Trehalose Biosynthesis Gene Families AT4G27550 59.8 5.3e-291 997.7
Lac5g0203 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.7 0.0e+00 1384.0
Lac13g1298 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1264.2
Lac12g0751 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1161.0
Lac13g0218 . 148 962 Trehalose Biosynthesis Gene Families AT4G17770 65.1 0.0e+00 1135.6
Lac3g0693 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 61.8 0.0e+00 1091.6
Lac1g3435 . 3 793 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1078.2
Lac13g1298 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1411.0
Lac5g0203 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.1 0.0e+00 1271.5
Lac12g0751 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1144.0
Lac13g0218 . 147 960 Trehalose Biosynthesis Gene Families AT1G68020 65.0 0.0e+00 1109.0
Lac3g0693 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Lac1g3435 . 2 801 Trehalose Biosynthesis Gene Families AT1G68020 62.0 0.0e+00 1075.8
Lac12g0751 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1387.5
Lac1g3435 . 1 800 Trehalose Biosynthesis Gene Families AT1G06410 72.9 0.0e+00 1251.5
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1151.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.3 0.0e+00 1137.5
Lac13g0218 . 147 962 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1086.2
Lac3g0693 . 1 847 Trehalose Biosynthesis Gene Families AT1G06410 59.1 2.3e-300 1028.9
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G70290 69.0 0.0e+00 1174.8
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 64.8 0.0e+00 1106.3
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.2 1.2e-293 1006.5
Lac12g0751 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.1e-291 1000.0
Lac5g0203 . 77 938 Trehalose Biosynthesis Gene Families AT1G70290 57.0 8.2e-287 983.8
Lac1g3435 . 6 804 Trehalose Biosynthesis Gene Families AT1G70290 55.9 9.2e-270 927.2
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G23870 75.4 0.0e+00 1328.9
Lac3g0693 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1206.8
Lac13g1298 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.3 0.0e+00 1120.1
Lac5g0203 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.1 0.0e+00 1114.0
Lac12g0751 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1099.3
Lac1g3435 . 5 801 Trehalose Biosynthesis Gene Families AT1G23870 59.5 1.3e-298 1023.1
Lac13g0218 . 147 979 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1308.9
Lac3g0693 . 1 840 Trehalose Biosynthesis Gene Families AT1G60140 67.5 0.0e+00 1204.1
Lac13g1298 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.5 0.0e+00 1086.6
Lac5g0203 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1085.1
Lac12g0751 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.6e-312 1069.3
Lac1g3435 . 6 805 Trehalose Biosynthesis Gene Families AT1G60140 58.8 9.0e-292 1000.3
Lac13g0218 . 153 962 Trehalose Biosynthesis Gene Families AT2G18700 61.9 6.0e-312 1067.4
Lac5g0203 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.9e-298 1021.1
Lac3g0693 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.4 3.5e-296 1015.0
Lac12g0751 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.4 1.5e-291 999.6
Lac13g1298 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 4.6e-288 988.0
Lac1g3435 . 1 797 Trehalose Biosynthesis Gene Families AT2G18700 58.3 9.3e-281 963.8
Lac11g1990 . 22 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 9.1e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38