Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2000 ATGGAGTGGGAAGGCAAAGAAGAAAGCTTCTTCTTTCTGGCCTTTAATTCATTTCCTCTGTTTCAAAACACACCGCCGGAAAAATGGAAACGCTCACCAACAGAACGATCTTCAGTTCTCGGATGTTTCCACGGCTCTTTCGAATCTGATTCTAACCGGCGGAGGAAATACTTTGGATTCGATCTTCTCTCACTGCGACAATTCGAGCTGCGACGGCGGAGATTTCGGGCCGGCGGTGGGGTCGTCGGTCTATCTCCGGCAGCGGGAGGTGCTGCAGAGGTTTTCTCAGGACAGGAAAGCAAATGGGTCTCGGATCTGTTTTCAAGGGCGTACGAGTTGCTGTATTCGGGCAGCGGGGCAGCCGTGGGCGGCGGCGAGAGGAAGCTTTACAGAGGAGTGCGGCAGAGGCAATGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGCAGAATCGGATGAGGGTCTGGTTGGGGACCTACGACTCGCCGGAGGCTGCGGCCTACGCCTACGACTGCGCCGCCTGTAAGCTCCGGGGGGAATACGCTCGGCTGAACTTTCCGAATATGAAGGATTTGAAGAGCGATTTGGGTTCCGGCGAGTTTGTGAAATTGAGTGGGTTGAAGAAATTGGTCGATGCGAAGATTCAAGCGATTTTTCAGAAGATTAAGGGGAAGGGGAAAAAGAGTGTGAAGAAGAAACAGAGGCCCGGCGACGATTTGGGTTCGGGCTCGTGTTCTTCGTCTTCGTCATCGGTGTCTGTGCCGCCGGCTATGGTGGAGTTGACAGACGAGTGGAGTTGGGAAAGGGTGTCGCCGGCGGCATCGGCGGCGGCGGAAGAGAGCTTGTGGAGTTTTGAGGAGTCGCCTCGGGCTGTTTCTATGGATTGCTCGACGGTGACGACGGTGGTGGGATCGGAAACAGAGTGCTACTCACTGGAGAAAATGCCTTCTTATGATGCGGAGCTGATTTGGGAAGTTCTTGCAAATTAG 987 54.61 MEWEGKEESFFFLAFNSFPLFQNTPPEKWKRSPTERSSVLGCFHGSFESDSNRRRKYFGFDLLSLRQFELRRRRFRAGGGVVGLSPAAGGAAEVFSGQESKWVSDLFSRAYELLYSGSGAAVGGGERKLYRGVRQRQWGKWVAEIRLPQNRMRVWLGTYDSPEAAAYAYDCAACKLRGEYARLNFPNMKDLKSDLGSGEFVKLSGLKKLVDAKIQAIFQKIKGKGKKSVKKKQRPGDDLGSGSCSSSSSSVSVPPAMVELTDEWSWERVSPAASAAAEESLWSFEESPRAVSMDCSTVTTVVGSETECYSLEKMPSYDAELIWEVLAN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35548426 35549674 + Lag0032638.1 Lac11g2000 587858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2000 328 FunFam Ethylene-responsive transcription factor 2 128 187 - -
Lac11g2000 328 SUPERFAMILY DNA-binding domain 129 186 IPR016177 GO:0003677(InterPro)
Lac11g2000 328 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 PRINTS Ethylene responsive element binding protein signature 168 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 Pfam AP2 domain 129 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 MobiDBLite consensus disorder prediction 239 255 - -
Lac11g2000 328 MobiDBLite consensus disorder prediction 226 255 - -
Lac11g2000 328 CDD AP2 128 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 125 327 IPR051758 -
Lac11g2000 328 Gene3D AP2/ERF domain 129 187 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2000 328 SMART rav1_2 129 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2000 Lac-Chr11:35548426 Lac6g0878 Lac-Chr6:7713336 5.30E-27 dispersed
Lac11g2000 Lac-Chr11:35548426 Lac5g2224 Lac-Chr5:40888013 4.80E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22942 PF00847 AP2 5.50E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2000 - - - 0.0