Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2015 ATGGAAGAAATGAGCGAGGAAATGACGCTGTTGGATGCGACAGAGGATGCACATGTCCAAAATAAGGTTAGGCAAGAGGCTCAGGAGAATGAGTATTCACTGAAACCTGAAAATACCAACATGGTTGAATCACAGGAAATGCTTATACCCATTGACGGTGGCTATTCCCAGGATTATCCTCATGAATTAACTGACATTTTAGAGGGTAAGAATCTGAATAGGTGTAAGAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCACTGTATGGATGATGCTGGTGTAATGGTCGAAGAGCTAACTGTGAAAAATCACCACGGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGACTGCTTTCTAGGCATAGTCAGTGGCAGCATTTTTACCAGCTAGCAAGTGGTTCAGGAAGTGGGAGTTCACATTTAGATGCTTCTTTCAAGAATATTGGTCAGGCAGTAATCACTGGCTTGGAGAATGGTGGGTACACATCTTTTCCTGAGTCTTTTGCTGGAAGGGCCAGTCGTAACGATTGTGGAGAGGAATTGGAAGAAATGAAGGCTATTGACAATAAGGGTGGTGATGCTCATGGCAGCATTCGGACCAAGATTCTATCTAAATCAGGTTTTCCTGAATTCTTTGTTAAAAATACCTTGAAAGGCAAGGGAATCATTCGTAGAGGTGTACCACTGGAGGGCTTTAATGTTGAACATAGGAACCCGAAGAATGCAAGGAATGCTGGGGGTATTACATTGGCATCTGACTCATCATTACAGCATGATGTCAAAACTGTCACGCCCTCTGTGTATAGGAAATCTGAGCGTAAACATCGGGGTTCTGCTTTAGATGGAATTAATCTGAGAGAATGGCTTAAAGTTCCCCACCGGAAAGTAAATAAAATTAAATGCTTGTATATATTTAGGCACATAGTTGAGCTGGTGGATCGTTCTCATGCTCGGGGGGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATATTGACGAAAAATCAGGTGAGGTACTTTGGATCTTTTATTCAAGGGAACATGCCAGAAAATCCAATGGTTAAAGATGGTCAGGGTTTAGATAGCCGTCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCTTTCACTTGGTGTATCTCCGAAAAAGCAAAAAGATGTCCAGAATACAAGTCTTATAGCCCGGCACTCTCATTTTCCTTTAAAATCTGGTGTCAATCTTGAAACTGGAAGTACTAGGGACTGCAGTACGAATGGTTTGGAAAATTATAATGAACATTTTGCAGAACAGGGGGTTTGGAGCAAGCCTGATGGCCCTTGTGCATACGATTCTGCCCAGACTTCAACAAGTGACCAATTGGAAGAGAAGTGGTATGCAAGTCCAGAGGAACTTAATTCAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTGCTTGGAAAGTTTGAATCAGATGGCGCACGTGCTGCAGCGATGTCAAATTTGCGTGAGAGGATTCTTCCTCCTAACTTTCTAGCAGATAATTTAAAAGAAGTTGGGTTTTGTCTTTGGCTACTTCATCCTGAACCTGCATCTCGTCCGACAACAAGGGAAATTTTAGAATCAGAACTAATAAATGGAATGGCGAATTCTCCGCCAGCAGAGCTTTCAACAAATATTGATGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTCACATCATTGAATGAACAAAAGCAGAAACATGCCTCAAAGTTGGTGGAAGACATTCGGTATTTAGAATCTGACATTGAAGAAGTCAATAAAAGGCATAGTTCAGCCAAACTCTTGGATAAACCTGGCTTGTCTAATACCGTGGATGGAAGGGATGATTTGGTGTTTCATGGAGGATATCTAAATTCAGATGTGCGCCCTCAGGTATCTAGAATATCACATATCAATGAAGAGAGAATAGCAAAAAATATAAGTCAACTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATCCTTCTGAGAATGATTTGGCAATTCGGACAGATAAAGATTTATTGAGAACTCGTGAAAACTGCTATCTACCACAAAAAGATGATGAGGGGAGTCACGGTGATCGTTTAGGGGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGTTATAGCAAGTTTGAAGTACGTGGGGTACTGAGAAATGGTGATTTTAACAGTTCATCGAATGTAATCTGTTCCTTGAGTTTTGATCGGGACGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGACTTTAATTCAGTCTTTAGTGACTCGGTAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTACATCAGGAACTATCTGGCTTCAACTGATTATGATGGTGTTGTTAAGTTATGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAACGAACATGAAAAGAGGGCGTGGTCTGTTGACTTTTCACAAGTGCATCCTACAAAATTGGCCAGTGGAAGTGATGATTGTGCTGTAAAACTTTGGAGTATTAACGAGAAGAACTGTTTGGGCACAATCAGGAACATAGCAAATGTCTGCTGCGTTCAATTCTCTGCTCACTCAACTCATTTGCTGGCTTTTGGGTCTGCCGATTACAGAACCTATTGCTTTGATCTACGAAATACTAAAGCCCCCTGGTGTGTGTTGGGTGGCCATGAGAAGGCTGTAAGCTATGTGAAATTCTTGGACTCCGAGACCCTTGTTTCTGCATCCACCGACAACACGTTGAAGCTATGGGATCTTAATAGAACAAATCCTACTGGCTTGTCTACCAATGCTTGCAGTTTAACTCTCAAAGGTCACACTAATGAAAAGAATTTCGTGGGTTTATCAGTTTCCAATGGCTACATTGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATGTCTGCCCATGCCAATGACTTCCTATAAGTTCGGTTCTATCGACCCTATTTCTGGAAAAGAGACCGAGGACGACAATGGACAGTTTGTTTCAAGTGCATGCTGGAGAGGAAAATCTGACATGGTTGTTGCAGCCAACTCAAGTGGGTGTATAAAAGTACTGCAAATGGTTTGA 3186 41.12 MEEMSEEMTLLDATEDAHVQNKVRQEAQENEYSLKPENTNMVESQEMLIPIDGGYSQDYPHELTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHHGSNLAIIGPSNNRARLLSRHSQWQHFYQLASGSGSGSSHLDASFKNIGQAVITGLENGGYTSFPESFAGRASRNDCGEELEEMKAIDNKGGDAHGSIRTKILSKSGFPEFFVKNTLKGKGIIRRGVPLEGFNVEHRNPKNARNAGGITLASDSSLQHDVKTVTPSVYRKSERKHRGSALDGINLREWLKVPHRKVNKIKCLYIFRHIVELVDRSHARGVLLHDLRPSSFRILTKNQVRYFGSFIQGNMPENPMVKDGQGLDSRLTRKRPLEQGNFLSLGVSPKKQKDVQNTSLIARHSHFPLKSGVNLETGSTRDCSTNGLENYNEHFAEQGVWSKPDGPCAYDSAQTSTSDQLEEKWYASPEELNSGCCSAKSNIFSLGVLLFELLGKFESDGARAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILESELINGMANSPPAELSTNIDEEDAESELLLQFLTSLNEQKQKHASKLVEDIRYLESDIEEVNKRHSSAKLLDKPGLSNTVDGRDDLVFHGGYLNSDVRPQVSRISHINEERIAKNISQLESAYFSMRSKVDPSENDLAIRTDKDLLRTRENCYLPQKDDEGSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFDFNSVFSDSVDIHYPAVEMFNRSKLSCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVSQFNEHEKRAWSVDFSQVHPTKLASGSDDCAVKLWSINEKNCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPTGLSTNACSLTLKGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRCLPMPMTSYKFGSIDPISGKETEDDNGQFVSSACWRGKSDMVVAANSSGCIKVLQMV 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35679605 35685609 + Lag0032653.1 Lac11g2015 587873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2015 1061 SMART WD40_4 964 1003 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 732 776 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 915 953 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 1020 1059 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 872 911 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 788 826 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 SMART WD40_4 829 869 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 Gene3D Transferase(Phosphotransferase) domain 1 289 561 - -
Lac11g2015 1061 PANTHER PROTEIN SPA1-RELATED 2 8 1061 IPR044630 GO:0009640(InterPro)
Lac11g2015 1061 SUPERFAMILY Protein kinase-like (PK-like) 287 556 IPR011009 -
Lac11g2015 1061 SUPERFAMILY WD40 repeat-like 746 1058 IPR036322 GO:0005515(InterPro)
Lac11g2015 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 836 878 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 ProSitePatterns Trp-Asp (WD) repeats signature. 940 954 IPR019775 -
Lac11g2015 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 962 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 719 1061 - -
Lac11g2015 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 955 - -
Lac11g2015 1061 PRINTS G protein beta WD-40 repeat signature 813 827 IPR020472 -
Lac11g2015 1061 PRINTS G protein beta WD-40 repeat signature 856 870 IPR020472 -
Lac11g2015 1061 PRINTS G protein beta WD-40 repeat signature 940 954 IPR020472 -
Lac11g2015 1061 Pfam WD domain, G-beta repeat 800 826 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 Pfam WD domain, G-beta repeat 921 953 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 Pfam WD domain, G-beta repeat 748 776 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 Pfam WD domain, G-beta repeat 831 869 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 835 IPR001680 GO:0005515(InterPro)
Lac11g2015 1061 ProSiteProfiles Protein kinase domain profile. 191 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2015 1061 Coils Coil 594 614 - -
Lac11g2015 1061 Gene3D - 720 1061 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2015 K16240 - - csv:101211350 1902.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2015 Lac-Chr11:35679605 Lac2g1265 Lac-Chr2:10381391 4.20E-166 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39