Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2027 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTTTCTTTCTGGGGTTGGTTTTTTCGCCGAGCAATGGCGACCCTGTTGAAGATAAGCGAGCTTTGCTTGATTTTGTGAAGAATCTCCCTCATTCTCGCTCTCTTAATTGGAATGCGGATTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTGAAGATGAATCTCGTGTTATAGCCGTTCGACTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCTCGGCGTTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGAGTTCCCTTCTGATTTCAGAAATCTTAGTAACTTGTCTTATCTCTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTGACCTTTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTCCTTCGCTTTCTAATCTGACAGCCCTCACGGGTTTGAATCTGGCAAACAACTCTCTCTCAGGAGAAATACCTGACCTTCAAATGCCCAAATTGCAGGTTCTGAATTTCTCTAACAACAATTTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAGGTCTGTATTTATAGGCAATGACGTATCCTTTGAGAGTTCTTTATCAAAAAATCCTCCTGTGCCCCCACCATTGCCCGTGTCGAATGTAAAGCCGAAGAATGCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTTTAGCATTTGGCTTTCTGATACTTGTTTGCTGCTCAAGAAGAAAGAGGGAAGAATATTCCGGGGATCTGCAGAAAGGCGGAATGTCGCCCGAGAAGGTAATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGCTGAAGGATGTCAGTGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCCTACTATTATTCCAAAGACGAGAAGCTGATGGTTTATGATTTTTATGGTCAGGGAAGCGTCTCGGCTATGTTACACGGTAAACGCGGAGAGGAGAAAACCCCGTTAGATTGGGACACGAGACTGCGAATTGCGGTTGGAGCAGGACGAGGAATCGCACGTGTCCATGCCGAGAATGGAGGGAAGCTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTGTCTCCACCTATATCTCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCGACACAGGCTTCAGATGTTTTCAGCTTCGGTGTGGTACTCCTCGAACTTCTAACTGGAAAGTCTCCGATACACGCAACGGGCGGCGAGGAGATCGTCCACTTGGTAAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAAGTATTTGATGTAGAGCTGATGAGGTATCCCAACATAGAGGAAGAAATGGTAGAGATGTTACAGATAGCCTTGTCATGTGTGGCCAGGATACCAGATCAGAGACCGAAAATGGAGGAAGTTGTGAAGATGATCGAAAGCGTTCGACCGATGGAAGTCGAGAATCGACCTTCTTCCACGTACCGATCTGAAAGTCCAATGCCGCAAGCTGTTGGGACAGAAAATTCAACCTCTCAGTGA 1884 46.76 MEALWIFSFVFFLGLVFSPSNGDPVEDKRALLDFVKNLPHSRSLNWNADSPVCHYWTGITCSEDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGEFPSDFRNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPPSLSNLTALTGLNLANNSLSGEIPDLQMPKLQVLNFSNNNLSGSVPKSLQRFPRSVFIGNDVSFESSLSKNPPVPPPLPVSNVKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCCSRRKREEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFYGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAGRGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMEEVVKMIESVRPMEVENRPSSTYRSESPMPQAVGTENSTSQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35855030 35857545 - Lag0032665.1 Lac11g2027 587885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2027 627 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g2027 627 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Lac11g2027 627 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Lac11g2027 627 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lac11g2027 627 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Lac11g2027 627 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lac11g2027 627 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Lac11g2027 627 MobiDBLite consensus disorder prediction 600 627 - -
Lac11g2027 627 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Lac11g2027 627 SUPERFAMILY Protein kinase-like (PK-like) 329 610 IPR011009 -
Lac11g2027 627 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524(InterPro)
Lac11g2027 627 MobiDBLite consensus disorder prediction 601 627 - -
Lac11g2027 627 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Lac11g2027 627 Pfam Protein tyrosine and serine/threonine kinase 329 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g2027 627 Gene3D Ribonuclease Inhibitor 137 227 IPR032675 -
Lac11g2027 627 SUPERFAMILY L domain-like 37 208 - -
Lac11g2027 627 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Lac11g2027 627 FunFam pollen receptor-like kinase 1 294 399 - -
Lac11g2027 627 PANTHER OS05G0588300 PROTEIN 8 606 IPR050994 -
Lac11g2027 627 Gene3D Transferase(Phosphotransferase) domain 1 401 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0124 Lac-Chr11:1135943 Lac11g2027 Lac-Chr11:35855030 3.40E-158 dispersed
Lac11g2027 Lac-Chr11:35855030 Lac6g2971 Lac-Chr6:47280640 1.70E-135 dispersed
Lac11g2027 Lac-Chr11:35855030 Lac5g2999 Lac-Chr5:47933678 9.10E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85763 PF00069 Pkinase 4.20E-34 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2027 - - - 0.0