Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2061 ATGGAAACCGGAGGAGGAGGATTTTATTTCAGTTCGAATTCGAATTCGAACAGCCAATTCACGGGTCAGATCCAAGGCGGGTTCGGATCCGGGGAGATTTTCAGTTTGGGGAACAACGAGTCGAGCGGCGGCGGCGAGGAGTTTCATCCGAACATGATGGTGGTGGGGCCGTGGGGGACGGCGGCGCAAGAGAACAACCGATTCCATTTACTGGATGATCAGGATTCTTCTTTGAGATGTGTGTTTCCATGTGAGCCAAACGAGAGGCCAAGCCAAGGCCTTTCTTTGTCTCTCAGCTCCTCCAATCCTTGTTCTATCGGCTTACAATCTTTCGAACTCAGACCCCAACAACAAAATCAATCGTCGTCCTTTCCCATTTTCCAGCTTCGAAACTCGAGGTTCTTGGCCCCAGCTCAGGAGCTTCTTTACGAGTTTTGCAGCCTCGGGATCACCAACAACAAAGCCCTCGATCGTTCCTCTTCACCAAAACAACACAAACCCAACAAACCCAAGCACTGGGAATTGGAAGATGGCTCTTCTTCCACCAAGCCGTCTCTTCAGTCCCTCGATTTCATGGAGTTGCAAAAGCGAAAAACAAAGCTCTTTTCCATGCTCGAAGAGGTTGAGAGAAGATACAGGCATTACTGCGAGCAAATGAAGGCGGTGGTGGCGGCGTTCGAGGCGGTGGCGGGGAGTGGCGCGGCGAGGGTGTACTCGGCGCTGGCTTCAAAGGCCATGTCGAGGCATTTCAGATGCCTGAAAGATGGAATCGTGGGGGAAATTCAGGCGACGAAGAAGGCAATGGGAGAGAAGGATCCGATTGCACCGGGAACCACCAGAGGAGAAACGCCGCGCCTGAGAGTCATCGATCAGGCTCTCAGGCAGCAGCGCGCCTTCCATCAAATCTCCATGATGGAAACTCATCCATGGCGCCCTCAGCGCGGCCTCCCCGAACGTTCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAACACTTTCTTCACCCGTATCCTAGCGATGTCGATAAACATATTTTGGCTCGCCAAACTGGGCTCTCGAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTGGAAGAAACAAAGGAACGAGAAGAAGAGATTAACAACAACAACAATGGCAACAACTCTTCCGATGGGATGGCGGATTTCGACGATGAAATCGACGGTCATCGGTCGATCCCGACACGGTTGTTGGAGGATCAGAAGCCGACGCCGGACCAACTCCTTAGAATAGACTCGGAATGTCTCTCTTCGATCGTCTCCAATACCTCGGAGAAGAACGATTCGAGAACCATGAAATCCATGCAGAACCACCACCACCTCCACAACACCCACAACCACGCCTTCGGACGAGTCACGGCGGATGCATTCGGCACGGTGGAGCTCGACTTCTCGTCCTACAACCACCATTCCGGTAGCGGCGGAGTTTCATACAACAACAACAGCAACAACAACAACAATCAACACTTCAACAACGGAAGCAGTGGCGGTGTATCGTTGACGTTAGGGTTACAGCAGCATGCAGCAGCCGGCGGGAATGGCGGCGGAGGGGTGAGCATCGCGTTCTCGCCGGCGGCAGCAGCACAAAGCTCCCTCTTCTTCACAAGAGATCACATGGAAGAATGCCAGCCAGTCCAATATTCTCTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAACTTGATGGGCGCTCAATTGCTTCATGACTTGGCCGGATAA 1782 52.3 METGGGGFYFSSNSNSNSQFTGQIQGGFGSGEIFSLGNNESSGGGEEFHPNMMVVGPWGTAAQENNRFHLLDDQDSSLRCVFPCEPNERPSQGLSLSLSSSNPCSIGLQSFELRPQQQNQSSSFPIFQLRNSRFLAPAQELLYEFCSLGITNNKALDRSSSPKQHKPNKPKHWELEDGSSSTKPSLQSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVAAFEAVAGSGAARVYSALASKAMSRHFRCLKDGIVGEIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEREEEINNNNNGNNSSDGMADFDDEIDGHRSIPTRLLEDQKPTPDQLLRIDSECLSSIVSNTSEKNDSRTMKSMQNHHHLHNTHNHAFGRVTADAFGTVELDFSSYNHHSGSGGVSYNNNSNNNNNQHFNNGSSGGVSLTLGLQQHAAAGGNGGGGVSIAFSPAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36432936 36435339 - Lag0032699.1 Lac11g2061 587919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2061 593 Gene3D - 313 375 - -
Lac11g2061 593 Coils Coil 191 211 - -
Lac11g2061 593 MobiDBLite consensus disorder prediction 495 514 - -
Lac11g2061 593 MobiDBLite consensus disorder prediction 156 184 - -
Lac11g2061 593 FunFam BEL1-like homeodomain protein 4 313 375 - -
Lac11g2061 593 Pfam Associated with HOX 129 257 IPR006563 -
Lac11g2061 593 ProSiteProfiles 'Homeobox' domain profile. 307 370 IPR001356 GO:0003677(InterPro)
Lac11g2061 593 Pfam Homeobox KN domain 327 366 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac11g2061 593 MobiDBLite consensus disorder prediction 382 408 - -
Lac11g2061 593 SUPERFAMILY Homeodomain-like 311 376 IPR009057 -
Lac11g2061 593 MobiDBLite consensus disorder prediction 159 178 - -
Lac11g2061 593 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 398 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac11g2061 593 SMART prehox3 123 259 IPR006563 -
Lac11g2061 593 CDD homeodomain 310 371 IPR001356 GO:0003677(InterPro)
Lac11g2061 593 SMART HOX_1 310 374 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2756 Lac-Chr10:42068568 Lac11g2061 Lac-Chr11:36432936 9.90E-71 dispersed
Lac11g2061 Lac-Chr11:36432936 Lac1g2488 Lac-Chr1:46314448 7.00E-70 dispersed
Lac11g2061 Lac-Chr11:36432936 Lac9g0810 Lac-Chr9:17043637 3.70E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22946 PF07526 POX 1.60E-45 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2061 - - - 0.0