Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2061 | ATGGAAACCGGAGGAGGAGGATTTTATTTCAGTTCGAATTCGAATTCGAACAGCCAATTCACGGGTCAGATCCAAGGCGGGTTCGGATCCGGGGAGATTTTCAGTTTGGGGAACAACGAGTCGAGCGGCGGCGGCGAGGAGTTTCATCCGAACATGATGGTGGTGGGGCCGTGGGGGACGGCGGCGCAAGAGAACAACCGATTCCATTTACTGGATGATCAGGATTCTTCTTTGAGATGTGTGTTTCCATGTGAGCCAAACGAGAGGCCAAGCCAAGGCCTTTCTTTGTCTCTCAGCTCCTCCAATCCTTGTTCTATCGGCTTACAATCTTTCGAACTCAGACCCCAACAACAAAATCAATCGTCGTCCTTTCCCATTTTCCAGCTTCGAAACTCGAGGTTCTTGGCCCCAGCTCAGGAGCTTCTTTACGAGTTTTGCAGCCTCGGGATCACCAACAACAAAGCCCTCGATCGTTCCTCTTCACCAAAACAACACAAACCCAACAAACCCAAGCACTGGGAATTGGAAGATGGCTCTTCTTCCACCAAGCCGTCTCTTCAGTCCCTCGATTTCATGGAGTTGCAAAAGCGAAAAACAAAGCTCTTTTCCATGCTCGAAGAGGTTGAGAGAAGATACAGGCATTACTGCGAGCAAATGAAGGCGGTGGTGGCGGCGTTCGAGGCGGTGGCGGGGAGTGGCGCGGCGAGGGTGTACTCGGCGCTGGCTTCAAAGGCCATGTCGAGGCATTTCAGATGCCTGAAAGATGGAATCGTGGGGGAAATTCAGGCGACGAAGAAGGCAATGGGAGAGAAGGATCCGATTGCACCGGGAACCACCAGAGGAGAAACGCCGCGCCTGAGAGTCATCGATCAGGCTCTCAGGCAGCAGCGCGCCTTCCATCAAATCTCCATGATGGAAACTCATCCATGGCGCCCTCAGCGCGGCCTCCCCGAACGTTCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAACACTTTCTTCACCCGTATCCTAGCGATGTCGATAAACATATTTTGGCTCGCCAAACTGGGCTCTCGAGAAGCCAGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTGGAAGAAACAAAGGAACGAGAAGAAGAGATTAACAACAACAACAATGGCAACAACTCTTCCGATGGGATGGCGGATTTCGACGATGAAATCGACGGTCATCGGTCGATCCCGACACGGTTGTTGGAGGATCAGAAGCCGACGCCGGACCAACTCCTTAGAATAGACTCGGAATGTCTCTCTTCGATCGTCTCCAATACCTCGGAGAAGAACGATTCGAGAACCATGAAATCCATGCAGAACCACCACCACCTCCACAACACCCACAACCACGCCTTCGGACGAGTCACGGCGGATGCATTCGGCACGGTGGAGCTCGACTTCTCGTCCTACAACCACCATTCCGGTAGCGGCGGAGTTTCATACAACAACAACAGCAACAACAACAACAATCAACACTTCAACAACGGAAGCAGTGGCGGTGTATCGTTGACGTTAGGGTTACAGCAGCATGCAGCAGCCGGCGGGAATGGCGGCGGAGGGGTGAGCATCGCGTTCTCGCCGGCGGCAGCAGCACAAAGCTCCCTCTTCTTCACAAGAGATCACATGGAAGAATGCCAGCCAGTCCAATATTCTCTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAACTTGATGGGCGCTCAATTGCTTCATGACTTGGCCGGATAA | 1782 | 52.3 | METGGGGFYFSSNSNSNSQFTGQIQGGFGSGEIFSLGNNESSGGGEEFHPNMMVVGPWGTAAQENNRFHLLDDQDSSLRCVFPCEPNERPSQGLSLSLSSSNPCSIGLQSFELRPQQQNQSSSFPIFQLRNSRFLAPAQELLYEFCSLGITNNKALDRSSSPKQHKPNKPKHWELEDGSSSTKPSLQSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVAAFEAVAGSGAARVYSALASKAMSRHFRCLKDGIVGEIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEREEEINNNNNGNNSSDGMADFDDEIDGHRSIPTRLLEDQKPTPDQLLRIDSECLSSIVSNTSEKNDSRTMKSMQNHHHLHNTHNHAFGRVTADAFGTVELDFSSYNHHSGSGGVSYNNNSNNNNNQHFNNGSSGGVSLTLGLQQHAAAGGNGGGGVSIAFSPAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36432936 | 36435339 | - | Lag0032699.1 | Lac11g2061 | 587919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2061 | 593 | Gene3D | - | 313 | 375 | - | - | |
Lac11g2061 | 593 | Coils | Coil | 191 | 211 | - | - | |
Lac11g2061 | 593 | MobiDBLite | consensus disorder prediction | 495 | 514 | - | - | |
Lac11g2061 | 593 | MobiDBLite | consensus disorder prediction | 156 | 184 | - | - | |
Lac11g2061 | 593 | FunFam | BEL1-like homeodomain protein 4 | 313 | 375 | - | - | |
Lac11g2061 | 593 | Pfam | Associated with HOX | 129 | 257 | IPR006563 | - | |
Lac11g2061 | 593 | ProSiteProfiles | 'Homeobox' domain profile. | 307 | 370 | IPR001356 | GO:0003677(InterPro) | |
Lac11g2061 | 593 | Pfam | Homeobox KN domain | 327 | 366 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac11g2061 | 593 | MobiDBLite | consensus disorder prediction | 382 | 408 | - | - | |
Lac11g2061 | 593 | SUPERFAMILY | Homeodomain-like | 311 | 376 | IPR009057 | - | |
Lac11g2061 | 593 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Lac11g2061 | 593 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 86 | 398 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac11g2061 | 593 | SMART | prehox3 | 123 | 259 | IPR006563 | - | |
Lac11g2061 | 593 | CDD | homeodomain | 310 | 371 | IPR001356 | GO:0003677(InterPro) | |
Lac11g2061 | 593 | SMART | HOX_1 | 310 | 374 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2756 | Lac-Chr10:42068568 | Lac11g2061 | Lac-Chr11:36432936 | 9.90E-71 | dispersed | |
Lac11g2061 | Lac-Chr11:36432936 | Lac1g2488 | Lac-Chr1:46314448 | 7.00E-70 | dispersed | |
Lac11g2061 | Lac-Chr11:36432936 | Lac9g0810 | Lac-Chr9:17043637 | 3.70E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22946 | PF07526 | POX | 1.60E-45 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2061 | - | - | - | 0.0 |