Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2067 | ATGGGCTTCCCTGCGAGCTACACCGAGCTTCTTCTTCCAAAGCTCTTCATCCATGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTCCGCCTTCTAGGGCTCCAGGATTTCCTCGAACCGGACATTCCTTGGCCCAATCAGCCCGATTCCTTCCCCACCGGCCCGTTGACGGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGCGAGATTCTCCCCGTCGTCAAGTTTTCCGACCTTCTCGACCCGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCGAACTGCCGCCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTCTGCCGGACGGTGTTCATTCCGGCCGATTTGCGGACTGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTCGAAGCACTCCACACCGATTCTTCCTCTTCTTCGTCGTCTTCGTCGAATCTTCTCACCGCTGGTTTGTAG | 549 | 59.02 | MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNQPDSFPTGPLTDLDPLSAAVLREILPVVKFSDLLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRTGGCNFDDRLWEDSEIFEALHTDSSSSSSSSSNLLTAGL | 182 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 36505429 | 36505977 | + | Lag0032705.1 | Lac11g2067 | 587925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2067 | 182 | SUPERFAMILY | RING/U-box | 74 | 139 | - | - | |
| Lac11g2067 | 182 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 168 | - | - | |
| Lac11g2067 | 182 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Lac11g2067 | 182 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Lac11g2067 | 182 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Lac11g2067 | 182 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) | |
| Lac11g2067 | 182 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2067 | Lac-Chr11:36505429 | Lac1g3006 | Lac-Chr1:50763712 | 3.90E-11 | dispersed | |
| Lac12g1661 | Lac-Chr12:32106630 | Lac11g2067 | Lac-Chr11:36505429 | 2.10E-40 | transposed | |
| Lac13g2092 | Lac-Chr13:30649936 | Lac11g2067 | Lac-Chr11:36505429 | 1.40E-07 | transposed | |
| Lac11g2067 | Lac-Chr11:36505429 | Lac7g0223 | Lac-Chr7:1758530 | 1.10E-37 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2067 | K16281 | - | csv:101215533 | 310.457 |