Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2077 | ATGGATGCGGCCGCGGTGGCGGTGACGGTGGCGGTGGCGATCGCGGTCGTGACCACGACCGCGTATTTGATTTGGTTCTTGAACATCAAACAGTCATTGAATGGGCCACGTGTCTGGCCTCTATTGGGCAGTCTTCCGGGACTGATTGAGAATAGTCACCGCATGCATGACTGGATTATGGAGAATCTCCGGTCAACAGGTGGCACGTACCAAACTTGCACGTGTGCCATTCCGTTCATGGCCAAAAAACAGGGTCTTGTGACGGTCACATGCGACCCGAAGAATTTGGAGCATATTTTGAAAACCCGGTTCGAGAATTACCCGAAAGGACCCAATTGGCAGGCTGTGTTTCATGATTTGCTTGGTGATGGAATCTTTAACTCCGATGGCGACACGTGGTTGTTCCAGCGTAAGACTGCTGCACTGGAATTTACCACCAGGACCCTTCGTCAAGCCATGGCTCGTTGGGTTAGCCGAGCTATTAAGTCTCGGTTTTGTCCGATTCTTGAGTCAGCTCAGCGTCGAGCTCAGCCGGTTGATCTTCAGGACCTTTTGCTTCGGCTGACATTCGATAATATTTGTGGGTTGACTTTCGGTAAAGATCCACAGACTCTCGCTCCTGACTTGCCCGAAAATGGCTTCGCTATGGCTTTTGACCGAGCCACCGAAGCCACATTGGGTCGCTTTATTTTGCCTAACTTCATATGGAAGCTGAAGAAATGGCTTCGGCTCGGGATGGAAGTGACGTTAACCCACAGCCTCGACCACACAGCTCAATACTTAACCAACATCATCGAGACACGTAAGCTTGAGCTATCCAATCAACAACACCAGAACGCCAATGGGACCCCACACGACGACTTGTTATCAAGGTTCATGAAAAGGAAAGAATCCTACTCAGACACATTCCTCCAACACGTGGCGCTCAACTTCATCCTAGCTGGACGCGACACGTCGTCCGTCGCGCTGAGCTGGTTCTTTTGGCTAGTCACCCAAAACCCAAGAGTGGAAGAGAAAATCCTCGTGGAAATCTGCACCGTACTAATGAAGACACGTGGCAAAGAGACCTCCACGTGGATCGAAGAGCCATTGAGCTTTGAAGAAGTGGACCGATTAATTTACCTCAAAGCCGCCTTGTCGGAAACTCTCCGGCTCTACCCATCAGTGCCGCAAGATTCAAAACACGTAGTGAACGACGACGTTTTACCCACCGGAGCTTTCGTTCCGGCTGGCTCTTCCATCACGTATTCGATTTACTCCGTCGGCCGAATGAAGTTCATATGGGGAGAGGATTGCTTAGAATTCAAACCGGAGAGATGGCTGGCTAATTCAGATGGAATGAAGAAATTTGAGCTTCAAAATGCTTATAAATTCGTTGCGTTTAATGCTGGGCCGAGAATTTGTTTGGGCAAAGATTTGGCTTACTTGCAGATGAAGTCGATTGCGGCGGCGGTGTTGCTCCGGCACCGCCTGACGGTGGCGGCGGGCCACCGTGTGGAGCAGAAGATGTCGTTGACGTTGTTCATGAAACATGGGCTTAAAGTTCACTTGCATCCGAGAGATTTGGGCCGTGTGGTGGAGAACATTAGCAAGACAGCGGCGGAGACGGTGGCGGTGGCGGTGGCAGTGGCGGCTGCTTGA | 1641 | 51.07 | MDAAAVAVTVAVAIAVVTTTAYLIWFLNIKQSLNGPRVWPLLGSLPGLIENSHRMHDWIMENLRSTGGTYQTCTCAIPFMAKKQGLVTVTCDPKNLEHILKTRFENYPKGPNWQAVFHDLLGDGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKSRFCPILESAQRRAQPVDLQDLLLRLTFDNICGLTFGKDPQTLAPDLPENGFAMAFDRATEATLGRFILPNFIWKLKKWLRLGMEVTLTHSLDHTAQYLTNIIETRKLELSNQQHQNANGTPHDDLLSRFMKRKESYSDTFLQHVALNFILAGRDTSSVALSWFFWLVTQNPRVEEKILVEICTVLMKTRGKETSTWIEEPLSFEEVDRLIYLKAALSETLRLYPSVPQDSKHVVNDDVLPTGAFVPAGSSITYSIYSVGRMKFIWGEDCLEFKPERWLANSDGMKKFELQNAYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHRVEQKMSLTLFMKHGLKVHLHPRDLGRVVENISKTAAETVAVAVAVAAA | 546 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 36645245 | 36646885 | + | Lag0032715.1 | Lac11g2077 | 587935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2077 | 546 | PRINTS | E-class P450 group I signature | 303 | 320 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | E-class P450 group I signature | 323 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | P450 superfamily signature | 314 | 331 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | PANTHER | CYTOCHROME P450 | 20 | 513 | - | - | |
| Lac11g2077 | 546 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac11g2077 | 546 | Gene3D | Cytochrome P450 | 28 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | FunFam | Cytochrome P450 | 27 | 523 | - | - | |
| Lac11g2077 | 546 | SUPERFAMILY | Cytochrome P450 | 30 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2077 | 546 | CDD | CYP86A | 73 | 513 | - | - | |
| Lac11g2077 | 546 | Pfam | Cytochrome P450 | 35 | 511 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0476 | Lac-Chr11:4952055 | Lac11g2077 | Lac-Chr11:36645245 | 1.00E-123 | dispersed | |
| Lac11g2077 | Lac-Chr11:36645245 | Lac7g2817 | Lac-Chr7:47278181 | 1.70E-195 | dispersed | |
| Lac11g2077 | Lac-Chr11:36645245 | Lac12g1712 | Lac-Chr12:32960627 | 3.70E-235 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2077 | K15398 | - | csv:101216733 | 929.858 |