Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2078 | ATGGAGGGCAAAGAAGAGGACGTGAAGCTAGGAGCCAACAAGTACTCAGAAAGACAGCCAATCGGCACATCGGCGCAGACCGACAAGGACTACAAAGAGCCGCCGCCGGCGCCGCTCTTCGAGCCCGGCGAGCTCTCCTCATGGTCCTTTTACAGAGCCGGAATCGCCGAGTTCATCGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTCATGGGCGTCAGCCGATCTCCGTCCAAGTGCAACACCGTCGGCATTCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATTAATCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCGCTCACCAGAGCCGTATTCTACATCATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGCTTCGAGAAGTCCATCTACGAGCAGAAGCTCGGCGGCGCGAACTTCGTCGCCTCCGGCTACACCAAGGGCAGCGGCCTCGGCGCCGAGATCGTCGGTACCTTCGTCCTCGTCTACACCGTCTTCTCGGCCACCGACGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGGCACCATTCCGATCACCGGCACCGGAATTAACCCGGCCAGGAGTCTTGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCATTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTCTTGCTGCAATCTACCACCAGATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA | 861 | 57.84 | MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITILTVMGVSRSPSKCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEKSIYEQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLGTIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36652190 | 36653393 | - | Lag0032716.1 | Lac11g2078 | 587936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2078 | 286 | NCBIfam | MIP family channel protein | 56 | 272 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | ProSitePatterns | MIP family signature. | 112 | 120 | IPR022357 | - | |
Lac11g2078 | 286 | Gene3D | Glycerol uptake facilitator protein. | 37 | 284 | IPR023271 | - | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 216 | 238 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 256 | 276 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 94 | 118 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 131 | 150 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PRINTS | Major intrinsic protein family signature | 180 | 198 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Lac11g2078 | 286 | FunFam | Probable aquaporin PIP1-2 | 37 | 286 | - | - | |
Lac11g2078 | 286 | Pfam | Major intrinsic protein | 44 | 273 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 5 | 282 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) | |
Lac11g2078 | 286 | CDD | MIP | 52 | 276 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2078 | 286 | SUPERFAMILY | Aquaporin-like | 45 | 278 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3194 | Lac-Chr10:46090835 | Lac11g2078 | Lac-Chr11:36652190 | 1.70E-138 | dispersed | |
Lac11g2078 | Lac-Chr11:36652190 | Lac9g2580 | Lac-Chr9:44358020 | 2.30E-111 | dispersed | |
Lac11g2078 | Lac-Chr11:36652190 | Lac13g1097 | Lac-Chr13:9352405 | 1.40E-140 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2078 | K09872 | - | csv:101217440 | 553.903 |