Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2078 ATGGAGGGCAAAGAAGAGGACGTGAAGCTAGGAGCCAACAAGTACTCAGAAAGACAGCCAATCGGCACATCGGCGCAGACCGACAAGGACTACAAAGAGCCGCCGCCGGCGCCGCTCTTCGAGCCCGGCGAGCTCTCCTCATGGTCCTTTTACAGAGCCGGAATCGCCGAGTTCATCGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTCATGGGCGTCAGCCGATCTCCGTCCAAGTGCAACACCGTCGGCATTCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATTAATCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCGCTCACCAGAGCCGTATTCTACATCATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGCTTCGAGAAGTCCATCTACGAGCAGAAGCTCGGCGGCGCGAACTTCGTCGCCTCCGGCTACACCAAGGGCAGCGGCCTCGGCGCCGAGATCGTCGGTACCTTCGTCCTCGTCTACACCGTCTTCTCGGCCACCGACGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGGCACCATTCCGATCACCGGCACCGGAATTAACCCGGCCAGGAGTCTTGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCATTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTCTTGCTGCAATCTACCACCAGATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA 861 57.84 MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITILTVMGVSRSPSKCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEKSIYEQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLGTIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36652190 36653393 - Lag0032716.1 Lac11g2078 587936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2078 286 NCBIfam MIP family channel protein 56 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lac11g2078 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Lac11g2078 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 MobiDBLite consensus disorder prediction 1 34 - -
Lac11g2078 286 FunFam Probable aquaporin PIP1-2 37 286 - -
Lac11g2078 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 282 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lac11g2078 286 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2078 286 SUPERFAMILY Aquaporin-like 45 278 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3194 Lac-Chr10:46090835 Lac11g2078 Lac-Chr11:36652190 1.70E-138 dispersed
Lac11g2078 Lac-Chr11:36652190 Lac9g2580 Lac-Chr9:44358020 2.30E-111 dispersed
Lac11g2078 Lac-Chr11:36652190 Lac13g1097 Lac-Chr13:9352405 1.40E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2078 K09872 - csv:101217440 553.903