Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2079 ATGGCTTCAGCTTTCACTTTCCTTCCATTTCCCCTCATTCTCTCTCCTCGTCCCACTATTCCATCTCTAAGACCTCAATTTCACCGCCAGTATCTTCCCGCCATTCGAATTCTCCGACCTTCAGTTCCTTCCGCCATCGGGCCGGACGGCAAGTTCTATCCGGACCCGGCCGACGACGAGCCGCCGGAAGCTGCGGAGGATGCTGGCCATGGGGTTTCGAAGTTTCAGCAGATATACCGCCAAGCGGCTCGTGCGAGAAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTACCTGTCGGCCATTGCTGACGTCGAGGATGCTCCTGAGAATGCCGAGTATTTGAATTCGGAGAGCACTGGAGATGATTTGTTTGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTCAAGCCGAACCCGAAGAAAGAAAAGGCGGTTGAGAAAGATGATATTGAGGGCGTTGATGAGTTGGAGACTGAGGAGGTCGCGGATTTGGAGGAGATTAACGAGCTTCAGGGGCTTACAGTGATTTCGGAGGACGAGGACGGGGATGAAGATGGGCCTGGGAATTTGGATGACGATGTAAGTGAATTAGGTGGTCAGGATCAACTTTCTTCTTTTAATTCTTTTGATGTAGATTTTGATAGCTATGGAAAAGTTAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCTGAGCTCTTGGATGAAAGTAAGGTCGTTCCTGTTTCTGTTTTCGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGACTCGAGGATGGTTAACGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTATATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAATTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCGTCAAAGAATATGGCCGTGATAGGAATAACTGGGACAGATGGTAAAACCAGCACTTCCTATTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGCTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCAAGTACAACCCCGGATGCTATTTTGGTTCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGAGGCAGGTGTGATAAAGTTGATTTTGATATAGCGGTTTTTACAAATTTGACCAGGGACCATTTGGATTTTCAAGGGTCAGAAGAGGAGTATAGGGATGCCAAGGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACATCGAAAAGTTGTTAACATTGATGATCCCAATGCACCATTCTTCATAGGGCAAGGAAACCCAGATGTGCCAATTGTTACCTTTGCAATGGAAAACAAAAATGCCGATGTCCATCCCCTGAAGTATGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCTCAGGGCATATTGGAGATATCATCAGGGTTGCTCGGAAAGCATAACATATACAATATTCTTGCAGCAGTGGCAGTGGGGATTGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTATTGAAGAGGTCGATGCTGTTCCAGGGAGATTTGAGCTGATTGATGAGGAACAGGCATTTGGTGTAATTGTTGATCATGCTCATACTCCTGATGGCCTGTCCCGGCTGCTTGATTCTGTGAGGGAGCTTGGGCCAAGGAGGATTATCACTGTTTTTGGATGCTGTGGGGAGCTTGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACCGATAAAAGTGATGTTACAATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGGGAAAATGATTACTATCCGCCTCTCTCAAATGGTCATAGGATTTTCCTGCATGATATTAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATTGAAGGTGATAAAAAGGATTTTTTTGATGATAGAGAAGAATGCAGAGAAGCATTGCAGTATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTTACCAGAGAGTCATTGATATACGATTGAAGAAAGGAATGGAATTCTGGAAGCAATCCTCGGATCAAAACCACTACTGGTGCAGTATTGAATTGCTATTACAAGTAGTAGATTCCAGTGATTTATCTACAAAGGGCACTTTAAGGACCGTTGGATTTGAGGAAGAAGACGACCCATCACTGTTTTTGAAGCTCTTTTTGCTGAGAGGGTCAGAATCTATGGATTTGCAGAGGCATTTTCTTGGTGGGTTTGCCATATCTGCTTTGGTTTTGCTGCTGATTTTTTTTCCTTCTCACGTGATGGCTGGGGATATAGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGATTGATGGCATAGAAGCCAGTGAATTTGTCGGCGTCGGTGCTAGATTTGGTGCTACCATTGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTAGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCGAAGAACAAGCTTTCTGGAGATATAATCATGGTCGATCGAGGTCACTGCAAATTCACTACAAAAGCAAATATAGCAGAAGCTGCTGGTGCTTCAGCTATACTCATAGTAAATAACCAGAAAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATTTAGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGCACAAGCTTGGAGAAGATGCTAATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCATTACGACCGCCGGTTGACATAGCTGAAGTATTTTTATGGTTGATGGCTGTTGGTACGATCTTGTGCTCGTCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCTATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATAGGCAGCCCTGGTGTTGTGTATATCAACATGGCATCAGCGGTTCTGTTTGTTGTCGTTGCTTCTTGCTTTTTGATTTTGCTTTACAAACTCATGTCATACTGGTTCATCGAGCTTTTGGTGGTCCTTTTCTGCATAGGAGGTGCAGAGGGCTTGCAAACTTGTTTGGTAGCGTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCTTACATCAAAATGCCATTCTTTGGAGCTGTTTCATACCTCACTGTGGCTGTTTCCCCATTCTGCATAGCATTTGCTGTTGTTTGGGCTGTTTATCGGAATGTGTCGTTTGCCTGGATCGGTCAAGACATACTTGGGATTGCACTGATAATTACAGTTCTTCAAATAGTTTGTATACCGAATCTCAAGGTTGGAACAGTGCTCCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGATGGCATCCCGATGCTGCTAAAGATCCCACGCATGTTCGATCCATGGGGTGGTTATAGTATTATCGGGTTTGGAGACATCCTTTTGCCTGGACTTGTAGTAGCATTTTCACTCAGGTATGACTGGTTGGCGAATAAGACCCTCCGGTTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATAACCTATGTGGCTTTGAACCTGATGGACGGCCACGGCCAGCCTGCGCTGCTTTACATCGTCCCGTTCACTATTGGTAAATTACTTTACGCTCGTCGGTAA 4053 44.81 MASAFTFLPFPLILSPRPTIPSLRPQFHRQYLPAIRILRPSVPSAIGPDGKFYPDPADDEPPEAAEDAGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESTGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKAVEKDDIEGVDELETEEVADLEEINELQGLTVISEDEDGDEDGPGNLDDDVSELGGQDQLSSFNSFDVDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVNAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDKVDFDIAVFTNLTRDHLDFQGSEEEYRDAKAKLFKRMVDPDRHRKVVNIDDPNAPFFIGQGNPDVPIVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGELDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSYQRVIDIRLKKGMEFWKQSSDQNHYWCSIELLLQVVDSSDLSTKGTLRTVGFEEEDDPSLFLKLFLLRGSESMDLQRHFLGGFAISALVLLLIFFPSHVMAGDIVHHDDLTPKKPGCENDFILVKVQTWIDGIEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDIGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKMPFFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDILGIALIITVLQIVCIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKTLRFGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTIGKLLYARR 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36668934 36681892 - Lag0032717.1 Lac11g2079 587937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2079 1350 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 242 751 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Lac11g2079 1350 PANTHER MUR LIGASE FAMILY MEMBER 229 758 - -
Lac11g2079 1350 Pfam Mur ligase family, catalytic domain 265 342 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Lac11g2079 1350 FunFam Signal peptide peptidase-like 3 888 1027 - -
Lac11g2079 1350 Pfam Mur ligase, glutamate ligase domain 582 727 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Lac11g2079 1350 MobiDBLite consensus disorder prediction 188 203 - -
Lac11g2079 1350 SUPERFAMILY PA domain 933 981 IPR046450 -
Lac11g2079 1350 CDD PA_GO-like 885 1023 - -
Lac11g2079 1350 Gene3D - 894 1026 - -
Lac11g2079 1350 Gene3D - 585 763 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Lac11g2079 1350 SUPERFAMILY MurE/MurF N-terminal domain 242 345 IPR035911 -
Lac11g2079 1350 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 264 752 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Lac11g2079 1350 SMART psh_8 1085 1349 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Lac11g2079 1350 Gene3D - 345 583 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Lac11g2079 1350 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 580 752 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Lac11g2079 1350 SUPERFAMILY MurD-like peptide ligases, catalytic domain 345 577 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Lac11g2079 1350 Pfam Mur ligase middle domain 354 559 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Lac11g2079 1350 Pfam Signal peptide peptidase 1086 1346 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Lac11g2079 1350 MobiDBLite consensus disorder prediction 48 71 - -
Lac11g2079 1350 MobiDBLite consensus disorder prediction 184 209 - -
Lac11g2079 1350 MobiDBLite consensus disorder prediction 53 67 - -
Lac11g2079 1350 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 585 758 - -
Lac11g2079 1350 Pfam PA domain 925 1009 IPR003137 -
Lac11g2079 1350 Gene3D - 243 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2079 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2079 Lac-Chr11:36668934 Lac12g1720 Lac-Chr12:33014969 4.30E-216 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g312 . . . . . . . . . . Cma02g01443 Cma15g01234 Car02g01211 Car15g01111 . . Cpe05g00343 . . . . . . . . . . . . . . Cone8ag0298 Cone12ag0304 . . . Csa05g00272 Chy09g01236 . . . . . . . . . . Cmo02g01479 Cmo15g01297 . . . . . Cpe13g00152 Bhi12g00274 . . Lac11g2079 Hepe06g1537 . Lcy12g1640 . . . . . . . Lsi09g00248 . . Cme09g01770
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37