Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2086 ATGGACCCCAAAGAAGTGAAGTCCGACTTGGTTTTGATTCTGGACTTCGGTTCGCAGTACACCCATCTCATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGTATTTCGGGTACTTCTTCGCTCAAGGCCATCACTGATCTCAACCCACAAGTTGTTATTCTCTCCGGTGGGCCTCACTCTGTCCATGCTAGCGACTCGCCCAGTTTCGCTTCTGGGTTCGTCGAGTGGGCGGAGGCGAATGGGGTGTTTGTTTTGGGTATTTGTTATGGGCTCCAGTTGATTGTGCAGAGGTTGGGAGGAGTGGTGAAGATTGGAGAGAAGCAGGAGTATGGGAGAATGGAGATTGAGGTGGAGAAGGCTAAGGGGTTGTTTGGGTCTAAGAAGGTTGGGGACCGGCAAGCTGTTTGGATGAGCCATGGTGATGAGGCGGCGAAACTTCCTGAGGGGTTTGAAGTTGTGGCAAGAAGTCAACAAGGGGCAGTTGCAGCTGTCGAAAATCATTCCAAGAAGTTTTATGGATTGCAGTATCATCCGGAGGTGACACATTCACCAGAGGGAATGGAAACATTACGTTATTTTCTCTTTGATGTTTGTGGAATTACCGCTAGCTGGAAGATGGAGAATATAGTAGATGAAGAACTTAAAATAATCAAAGAAACTGTGGGTCCAGATGATCACGTCATATGTGCATTATCAGGGGGTGTGGATTCAACAGTTGCTGCAACTCTTGTTCATAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTTGACAATGGTTTATTAAGGTATAAAGAAAGAGAACGTGTTATGGAAACCTTTGAAAGAGATCTTCATTTGCCTGTTACTTGTGTTGATGCAGTTGATCATTTTCTTAGCAAGCTTAAAGGTGTAGTAGATCCTGAGGTGAAAAGAAAAATAATTGGAAAGGAGTTCATTTCTATATTTGATTCATTTGCCCATGATTTGGAACTTAAAATTGGTAAGAAGCCTTCATACTTGGTCCAAGGAACATTGTACCCTGATGTAATTGAATCTTGTCCACCACCTGGATCTGGAAGTACCCATTCCCACACGATCAAAAGTCATCATAATGTTGGAGGACTTCCCAAGGACATGAAACTGAAACTTATTGAGCCACTTAAACTCCTCTTTAAAGATGAGGTACGCCAACTCGGGAGGATATTGAATGTTCCTGATGCGTTTCTAAAGCGTCACCCATTTCCTGGACCTGGTCTTGCTGTACGAGTGTTGGGCGACGTAACAGAAGGCAATGCCTTGGATGTTCTTCGCCAGGTTGATGAGATATTTATTCAGTCAATCAAGGATGCTGGGCTTTATGATTCAATATGGCAAGCGTTTGCAGTGTTTTTACCTATAAAATCAGTTGGAGTTCAGGGTGATCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGATTGGTTTAATTTTGAGCACCAGTTCCTGGATAATGTGTCAAGAAAAATTTGCAATAGTGTTCGGGGGTAA 1548 43.73 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSSLKAITDLNPQVVILSGGPHSVHASDSPSFASGFVEWAEANGVFVLGICYGLQLIVQRLGGVVKIGEKQEYGRMEIEVEKAKGLFGSKKVGDRQAVWMSHGDEAAKLPEGFEVVARSQQGAVAAVENHSKKFYGLQYHPEVTHSPEGMETLRYFLFDVCGITASWKMENIVDEELKIIKETVGPDDHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDAVDHFLSKLKGVVDPEVKRKIIGKEFISIFDSFAHDLELKIGKKPSYLVQGTLYPDVIESCPPPGSGSTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALDVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWFNFEHQFLDNVSRKICNSVRG 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36740959 36744422 + Lag0032724.1 Lac11g2086 587944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2086 515 PANTHER GMP SYNTHASE-RELATED 6 515 - GO:0003921(PANTHER)|GO:0005829(PANTHER)|GO:0006177(PANTHER)
Lac11g2086 515 Pfam GMP synthase C terminal domain 443 515 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Lac11g2086 515 PRINTS Glutamine amidotransferase superfamily signature 86 97 - -
Lac11g2086 515 PRINTS Glutamine amidotransferase superfamily signature 176 189 - -
Lac11g2086 515 PRINTS Glutamine amidotransferase superfamily signature 55 64 - -
Lac11g2086 515 FunFam GMP synthase [glutamine-hydrolyzing] 8 205 - -
Lac11g2086 515 FunFam GMP synthase [glutamine-hydrolyzing] 208 418 - -
Lac11g2086 515 SUPERFAMILY Class I glutamine amidotransferase-like 9 237 IPR029062 -
Lac11g2086 515 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 196 428 - -
Lac11g2086 515 Pfam tRNA methyl transferase HUP domain 229 265 - -
Lac11g2086 515 NCBIfam glutamine-hydrolyzing GMP synthase, C-terminal domain 211 514 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Lac11g2086 515 Gene3D - 414 515 - -
Lac11g2086 515 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 207 408 IPR025777 GO:0003921(InterPro)|GO:0005524(InterPro)
Lac11g2086 515 Gene3D HUPs 208 413 IPR014729 -
Lac11g2086 515 CDD GATase1_GMP_Synthase 11 197 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
Lac11g2086 515 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 206 - -
Lac11g2086 515 Pfam Glutamine amidotransferase class-I 12 199 IPR017926 -
Lac11g2086 515 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 413 514 - -
Lac11g2086 515 CDD GMP_synthase_C 229 515 IPR001674 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006164(InterPro)|GO:0006177(InterPro)
Lac11g2086 515 Gene3D - 4 204 IPR029062 -
Lac11g2086 515 NCBIfam glutamine-hydrolyzing GMP synthase, N-terminal domain 11 203 IPR004739 GO:0003922(InterPro)|GO:0005524(InterPro)|GO:0006177(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2086 K01951 - - csv:101217911 999.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2086 Lac-Chr11:36740959 Lac11g2102 Lac-Chr11:36927500 9.60E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33