Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2103 ATGTTGAGGTTTCCGCGGCGGAAACGCTCGCCGGAGGCAACAGAGGAGAGTGCAAATACTGCAGCGATTATCGACGACAACGAGACGGCGGCGGCGGCGGCGGCGGCCAAGGCGGTGCTCTGTGTTTCCGGCATGAGTTGCTCTGCCTGCGCTGTTTCTGTCGAGAATTCCGTCAAACAACTTCCAGGCATTCTCGATGCCGCCGTCGATTTCTTGAACGATAGGGCTCAAATCCTCTTTCTCCCCAATCTCATCGACGAAGATACAATACTTAAGGCAATTGAAAATGCTGGATTTCAAGCTTCGATATCGAAGGACGGGACCGAGCATCGATCGCGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGCTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGAAATGTATGGAGTACAAAAGGCTCACATTGCTCTGTTGAAAGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAATTGCAGTCAGTTCATTGTAGCCATACAAGATATTGGCTTTGAAGCCTTACTTATAACCATTGGTGAACACATTAGCAAGATTGAGCTTAAGGTTGATGGTATGCATAACGAAAACTCGACCGCAAAAGTTAAAGAATCACTCGAATCCGTCCCGGGAATCGAAGATGTCGATATCGATATGTCATTGAGCAAAGTTACCATATCCTATAGGCCTGATATAACGGGACCTAGAAGTTTCCTCGAAGTCATCGAGTCGATCAAATCCGAGCATTTCAAGACAACGATATATCCCGAAGAAGTGGGACGAGAAACTCGTAAGGAGAAAGAAATTAGGCAGCATTATAAGTACTTTTTGTGGAGCTCTGCTCTCTCTATTCCTGTTTTCTTAACATCTATGGTCTTCATGTATATACCTGGAATCAAGCAGACATTAGATATCAAAGTAGTCAATATGATGAATGTTGGACAGATTATCCGATGGAATTTGTCGACTCCGGTGCAGTTCGTCATAGGTTCGAGATTCTACGTCGGATCGTATAAAGCGTTGCGGCGTGGTTCTGCCAACATGGATGTATTGATTACATTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATATAGTGCTAAGAGCAGCTACATCCCCTGCTTTCAATGGAACTGATTTCTTTGAGACTAGTTCAATGTTGATCACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTGGCAAAGGGAAAGACCTCTGAGGCCATTGCCAAGCTTAAGCACTTGGCTCCCGAGACGGCGACGCTCTTGACGCTCGATGGCCATGGAAATGTCATTGGCGAAGTGGAAATCAGTAGTGAGCTGATTCAAAAGAATGATGTTATTAAGATTACACCAGGTGCGAAAGTAGCTTCTGATGGTCTCGTCGTATGGGGCGAAAGTCATGTCAATGAGAGTATGATCACCGGAGAAGCGAAACCGGTTGCGAAAAGGACCGGCGACAAGGTGATAGGAGGAACTGTGAATGAGAATGGGGTATTGCATATAAAGGCAACACATGTCGGATCGGAGAGTTCTTTAGCGCAAATCGTTCGACTCGTCGAATCGTCTCAGTTGGCGAAAGCTCCTATTCAGAAATTTGCAGACCATATCTCTAAGTATTTTGTGCCTCTGGTAATTTCACTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTGCATCTCTATCCTAAGTCCTGGTTGCCTTCTTCAATGGACAGTTTTGAGCTTGCTCTCCAATTTGGGATTTCTGTTATGGTCATTGCTTGCCCTTGTGCCCTCGGCCTCGCCACCCCAACCGCCGTGATGGTCGGTACCGGTGTCGGTGCATCTCAAGGTGTTCTAATCAAAGGTGGTCAAGCATTAGAATTTGCACACAAGGTGAGTTGCATTGTGTTTGACAAGACAGGAACATTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAGACTTATGGACACTATAGTACTTGAGGAACTTCTTGAACTCACTGCTGCAACTGAGGTGAACAGTGAGCACCCAGTGGCCAAGGCCATTGTTGAATATGCCAAGCAATTCAAGGAAGAACAGAACCCCATTTGGCCAGAAGCTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCACTGTAAGGAACAAGAAAGTAATGGTTGGAAACAAGAGCTTGATGATGAACAATGACATAGAAATTCCGGGGGAAGCGGAAAGCTTCATCGTCGACGCTGAAGGCATGGCGCAAACTGCGGTTTTCGTGGCCATAGATCGGACGGTGTCGGGAGTTATTGCGGTGTCCGATCCGTTGAAACCGGGCGCCAAAGAAGTCATCTCCATTCTCAAGTCTATGGAAGTAAAGAGCATCATGGTAACAGGTGACAATTGGGGAACTGCACATTCCATTGCCAAACAAGTTGGAATTGAAACAGTCATTGCAGAGGCCAAGCCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACAGCGGGACACACGGTGGCGATGGTGGGAGACGGGATCAACGACTCGCCTGCCCTTGTAGCGGCCGATGTCGGGATGGCGATCGGAGCTGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTGATCTTTCAAGAAAAACCTTTGCTAGAATTCGCTTGAATTACATTTGGGCTCTTGGCTATAATCTTCTGGCCATTCCAATAGCCGCAGGCGTCTTGTTCCCTTCGACTCGGTTTCGGCTACCGCCGTGGATCGCCGGAGCTGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACCAGAGACCAAAGAAGCTTGATGAAGTTGAGATTCAAATGAAAGGAATAGTGGTTGAATGA 2928 46.11 MLRFPRRKRSPEATEESANTAAIIDDNETAAAAAAAKAVLCVSGMSCSACAVSVENSVKQLPGILDAAVDFLNDRAQILFLPNLIDEDTILKAIENAGFQASISKDGTEHRSREVCRIRVNGMGCNSCSSMVESVLEEMYGVQKAHIALLKEEAEVHYDPKVVNCSQFIVAIQDIGFEALLITIGEHISKIELKVDGMHNENSTAKVKESLESVPGIEDVDIDMSLSKVTISYRPDITGPRSFLEVIESIKSEHFKTTIYPEEVGRETRKEKEIRQHYKYFLWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGQIIRWNLSTPVQFVIGSRFYVGSYKALRRGSANMDVLITLGTNAAYFYSVYIVLRAATSPAFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVIGEVEISSELIQKNDVIKITPGAKVASDGLVVWGESHVNESMITGEAKPVAKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVISLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVRLMDTIVLEELLELTAATEVNSEHPVAKAIVEYAKQFKEEQNPIWPEAQEFISIPGHGVEATVRNKKVMVGNKSLMMNNDIEIPGEAESFIVDAEGMAQTAVFVAIDRTVSGVIAVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTAHSIAKQVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIDLSRKTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYQRPKKLDEVEIQMKGIVVE 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36935308 36947238 - Lag0032741.1 Lac11g2103 587961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2103 975 SUPERFAMILY HMA, heavy metal-associated domain 184 251 IPR036163 GO:0046872(InterPro)
Lac11g2103 975 ProSiteProfiles Heavy-metal-associated domain profile. 189 255 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 Gene3D - 607 901 IPR023214 -
Lac11g2103 975 Gene3D - 725 775 IPR023299 GO:0000166(InterPro)
Lac11g2103 975 Gene3D - 647 724 IPR023299 GO:0000166(InterPro)
Lac11g2103 975 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 969 - -
Lac11g2103 975 CDD HMA 118 179 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 CDD HMA 192 258 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 Pfam E1-E2 ATPase 421 618 - -
Lac11g2103 975 FunFam ATPase copper transporting beta 110 183 - -
Lac11g2103 975 SUPERFAMILY HMA, heavy metal-associated domain 114 185 IPR036163 GO:0046872(InterPro)
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 867 879 - -
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 844 863 - -
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 791 801 - -
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 640 654 - -
Lac11g2103 975 PRINTS P-type cation-transporting ATPase superfamily signature 769 780 - -
Lac11g2103 975 NCBIfam heavy metal translocating P-type ATPase 353 953 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lac11g2103 975 SUPERFAMILY Calcium ATPase, transduction domain A 440 526 IPR008250 -
Lac11g2103 975 NCBIfam HAD-IC family P-type ATPase 393 926 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac11g2103 975 Gene3D - 408 530 - -
Lac11g2103 975 SUPERFAMILY HAD-like 639 950 IPR036412 -
Lac11g2103 975 Gene3D - 190 259 - -
Lac11g2103 975 Gene3D - 29 109 - -
Lac11g2103 975 SFLD C1.7: P-type atpase like 622 896 - -
Lac11g2103 975 Pfam haloacid dehalogenase-like hydrolase 637 858 - -
Lac11g2103 975 FunFam Copper-transporting ATPase HMA5 35 106 - -
Lac11g2103 975 FunFam Copper-transporting ATPase 1, putative 408 530 - -
Lac11g2103 975 CDD HMA 42 102 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 ProSiteProfiles Heavy-metal-associated domain profile. 114 180 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 ProSiteProfiles Heavy-metal-associated domain profile. 36 102 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 PRINTS Copper-transporting ATPase 1 signature 37 62 - -
Lac11g2103 975 PRINTS Copper-transporting ATPase 1 signature 92 112 - -
Lac11g2103 975 PRINTS Copper-transporting ATPase 1 signature 63 86 - -
Lac11g2103 975 PRINTS Copper-transporting ATPase 1 signature 138 159 - -
Lac11g2103 975 NCBIfam copper ion binding protein 118 179 IPR006122 GO:0005507(InterPro)
Lac11g2103 975 SFLD p-type atpase 622 896 IPR044492 -
Lac11g2103 975 CDD P-type_ATPase_Cu-like 281 940 - -
Lac11g2103 975 ProSitePatterns Heavy-metal-associated domain. 120 150 IPR017969 GO:0046872(InterPro)
Lac11g2103 975 Pfam Heavy-metal-associated domain 193 251 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 Pfam Heavy-metal-associated domain 118 178 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 Pfam Heavy-metal-associated domain 42 99 IPR006121 GO:0046872(InterPro)
Lac11g2103 975 ProSitePatterns Heavy-metal-associated domain. 42 71 IPR017969 GO:0046872(InterPro)
Lac11g2103 975 Gene3D - 110 181 - -
Lac11g2103 975 SUPERFAMILY Calcium ATPase, transmembrane domain M 385 923 IPR023298 -
Lac11g2103 975 FunFam Probable copper-transporting ATPase HMA5 748 901 - -
Lac11g2103 975 ProSitePatterns E1-E2 ATPases phosphorylation site. 642 648 IPR018303 -
Lac11g2103 975 SUPERFAMILY HMA, heavy metal-associated domain 36 105 IPR036163 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2103 Lac-Chr11:36935308 Lac1g1655 Lac-Chr1:37869389 0.00E+00 dispersed
Lac11g2103 Lac-Chr11:36935308 Lac6g2287 Lac-Chr6:40109952 1.30E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2103 K17686 - csv:101220448 1684.46