Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2126 ATGAATCGGACCGGGTCGTGTCGGAGCTCATTCTCAGGCGCGCTGCTCTTCTCAACTCCGATTCCGATTCCGGTTCTTTTCTTCTTCGCTTTGCCTCCAGACGAAAATCTCGCCGGATTGAGGCGAAACTACGCGAGAATCGGAGATCTTTACGGTTCAGATCTGGGAGAAGAGGCGATGTCTCCGTCGCCGGCGGAACCGATCGGCGATTCCGGAACCGGAGATTCTCAGAGATCTATTCCGACGCCGTTTCTAACGAAAACTTATCAACTCGTTGATGATCCGGCTGTCGACGACCTCATCTCGTGGAACGAAGATGGATCTACCTTTATAGTTTGGCGACCTGCCGAATTCGCTCGAGATTTACTTCCTAAATACTTTAAACACAATAACTTTTCTAGTTTCGTCCGTCAACTTAACACTTACGGATTCCGAAAGGTCGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCAAGAGAGGTGAAAAAGGACTTCTCCGAGACATCCAGCGGCGGAAGGTCGCACTGTCGGTAGCGACGACGGCGACGGCGACACCGACGCCGGCCGCGGTGGCTGCACCACCGGTGACAGTCGCAGCGTCTCCGGCGGTGGCAGCGCACGTGATATCGCCGGCGAACTCTGCGGAAGAGCAGGTGACGTCGTCGAACTCATCGCCGATGGCATTTCAGCGAGGTACGAGCTGCAGCACGACGCCGGAACTGGTGAGAGAGAACGAGCGGCTTCGGAAGGAGAACATGCAACTGAATCAGGAGTTGAGTCAGTTGAAAGGACTGTGCAACAACATACTGTCGTTGATGACGAATTACGCGTCAGGAGGTGAGCAACAGTTGGAGTCGGGGAGCGTCCGGGACGGGAAGGCGCTGGAGCTGCTGCCGGCGAGGCAGGTGATGGAAGACGAAGGCGCGGTGAGCGACGGGATTCAGGAAATGAGACTGAAGGTGGAGGAGACGGCGATGGCGGAGGGAATGACGCCGAAACTGTTCGGAGTTTCGATCGGAGTGAAGCGCGTGAGGAGAGAGGAGGAGGAGGAGGAAGAAGAAATGGTGGGGCAGAATCACGTACAGTCGGAAGAAGGTGAGACCGGGTCAGAGATAAAAGCTGAGCCGTTGGATGAGAACTCTGAAAATCCAGAGGGATTCGCATCGCCGTGGCTGGAACTCGGAAATCAAGGCTCCTCCTGA 1206 55.47 MNRTGSCRSSFSGALLFSTPIPIPVLFFFALPPDENLAGLRRNYARIGDLYGSDLGEEAMSPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFKRGEKGLLRDIQRRKVALSVATTATATPTPAAVAAPPVTVAASPAVAAHVISPANSAEEQVTSSNSSPMAFQRGTSCSTTPELVRENERLRKENMQLNQELSQLKGLCNNILSLMTNYASGGEQQLESGSVRDGKALELLPARQVMEDEGAVSDGIQEMRLKVEETAMAEGMTPKLFGVSIGVKRVRREEEEEEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGFASPWLELGNQGSS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37285583 37287711 + Lag0032764.1 Lac11g2126 587984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2126 401 ProSitePatterns HSF-type DNA-binding domain signature. 123 147 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2126 401 MobiDBLite consensus disorder prediction 56 79 - -
Lac11g2126 401 SMART hsfneu3 80 173 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2126 401 MobiDBLite consensus disorder prediction 346 401 - -
Lac11g2126 401 FunFam Heat stress transcription factor B-4 76 174 - -
Lac11g2126 401 Gene3D - 76 174 IPR036388 -
Lac11g2126 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 73 294 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac11g2126 401 PRINTS Heat shock factor (HSF) domain signature 135 147 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2126 401 PRINTS Heat shock factor (HSF) domain signature 84 107 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2126 401 PRINTS Heat shock factor (HSF) domain signature 122 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2126 401 MobiDBLite consensus disorder prediction 346 381 - -
Lac11g2126 401 SUPERFAMILY Winged helix DNA-binding domain 81 173 IPR036390 -
Lac11g2126 401 Coils Coil 239 266 - -
Lac11g2126 401 Pfam HSF-type DNA-binding 84 173 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2126 K09419 - - csv:101203886 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2126 Lac-Chr11:37285583 Lac2g0331 Lac-Chr2:2462129 1.40E-45 dispersed
Lac1g1536 Lac-Chr1:36534421 Lac11g2126 Lac-Chr11:37285583 1.80E-48 transposed
Lac1g2563 Lac-Chr1:47000338 Lac11g2126 Lac-Chr11:37285583 8.30E-51 transposed
Lac1g3328 Lac-Chr1:52991313 Lac11g2126 Lac-Chr11:37285583 1.90E-26 transposed
Lac5g0764 Lac-Chr5:10031566 Lac11g2126 Lac-Chr11:37285583 1.20E-15 transposed
Lac11g2126 Lac-Chr11:37285583 Lac5g2915 Lac-Chr5:47297681 4.00E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0181 . 168 368 HSF AT4G17750 55.0 1.0e-58 225.3
Lac4g2238 . 53 288 HSF AT4G17750 51.0 1.0e-58 225.3
Lac11g2665 . 43 245 HSF AT4G17750 54.4 1.2e-57 221.9
Lac13g1296 . 15 262 HSF AT4G17750 50.7 1.7e-56 218.0
Lac6g3077 . 114 317 HSF AT4G17750 52.1 1.0e-50 198.7
Lac11g2126 . 52 174 HSF AT4G17750 61.0 1.2e-38 158.7
Lac6g0293 . 20 118 HSF AT4G17750 70.7 2.0e-38 157.9
Lac2g0331 . 20 118 HSF AT4G17750 69.7 3.5e-38 157.1
Lac11g2665 . 44 249 HSF AT5G16820 56.9 3.1e-60 230.3
Lac4g2238 . 54 261 HSF AT5G16820 57.9 1.2e-59 228.4
Lac6g0181 . 169 367 HSF AT5G16820 52.7 1.4e-55 214.9
Lac7g0435 . 328 524 HSF AT5G16820 50.7 4.5e-51 199.9
Lac13g1296 . 11 242 HSF AT5G16820 50.2 5.9e-51 199.5
Lac6g3077 . 115 299 HSF AT5G16820 53.9 8.0e-48 189.1
Lac1g3441 . 9 191 HSF AT5G16820 50.3 1.3e-42 171.8
Lac3g0896 . 11 178 HSF AT5G16820 50.5 4.3e-41 166.8
Lac5g0201 . 11 508 HSF AT1G32330 54.6 1.1e-121 434.5
Lac4g2238 . 42 257 HSF AT1G32330 53.5 9.2e-60 228.8
Lac11g2665 . 32 229 HSF AT1G32330 53.1 3.6e-56 216.9
Lac6g0181 . 157 350 HSF AT1G32330 53.9 8.9e-55 212.2
Lac7g0435 . 326 502 HSF AT1G32330 51.1 2.3e-47 187.6
Lac6g0293 . 20 117 HSF AT1G32330 70.4 1.3e-37 155.2
Lac11g2665 . 44 264 HSF AT3G02990 55.3 1.3e-63 241.5
Lac4g2238 . 54 271 HSF AT3G02990 55.1 2.3e-60 230.7
Lac6g0181 . 169 368 HSF AT3G02990 52.7 2.1e-56 217.6
Lac4g2238 . 42 256 HSF AT2G26150 57.9 6.1e-66 248.8
Lac6g3077 . 98 317 HSF AT2G26150 53.8 4.5e-61 232.6
Lac5g0201 . 13 239 HSF AT2G26150 57.0 7.8e-61 231.9
Lac7g0435 . 326 778 HSF AT4G13980 52.0 1.0e-116 417.9
Lac6g0181 . 157 360 HSF AT5G43840 52.9 2.1e-48 190.3
Lac4g2238 . 14 368 HSF AT3G22830 50.1 6.7e-96 348.6
Lac11g2665 . 32 344 HSF AT3G22830 50.4 8.2e-86 315.1
Lac5g0201 . 25 238 HSF AT3G22830 58.9 1.3e-62 238.0
Lac4g2238 . 41 343 HSF AT3G51910 53.2 1.0e-71 267.7
Lac11g2665 . 32 324 HSF AT3G51910 52.5 4.2e-70 262.3
Lac6g0181 . 157 373 HSF AT3G51910 52.5 7.7e-56 214.9
Lac11g2665 . 32 336 HSF AT3G63350 50.2 3.5e-67 252.7
Lac6g0181 . 157 356 HSF AT3G63350 52.9 7.0e-52 201.8
Lac4g2238 . 55 243 HSF AT1G67970 52.1 1.7e-45 181.0
Lac6g3077 . 109 318 HSF AT5G54070 53.5 7.5e-53 205.3
Lac1g2563 . 2 301 HSF AT4G36990 51.8 2.8e-72 269.6
Lac6g0293 . 17 115 HSF AT5G62020 67.7 1.2e-38 157.9
Lac11g2126 . 75 396 HSF AT4G11660 53.7 8.1e-80 295.0
Lac2g0331 . 16 122 HSF AT4G11660 72.9 6.5e-45 179.1
Lac6g0293 . 16 119 HSF AT4G11660 74.0 1.1e-44 178.3
Lac1g2563 . 2 100 HSF AT4G11660 73.7 1.4e-42 171.4
Lac3g1474 . 20 118 HSF AT4G11660 66.7 1.7e-37 154.5
Lac7g2097 . 12 110 HSF AT4G11660 68.7 3.8e-37 153.3
Lac7g2097 . 17 216 HSF AT2G41690 54.7 3.9e-51 199.1
Lac1g1310 . 45 231 HSF AT2G41690 54.1 9.7e-50 194.5
Lac2g0331 . 1 338 HSF AT1G46264 52.2 6.1e-90 328.6
Lac6g0293 . 19 378 HSF AT1G46264 51.6 5.9e-85 312.0
Lac3g1474 . 22 208 HSF AT1G46264 57.5 2.5e-59 226.9
Lac1g2563 . 4 198 HSF AT1G46264 51.2 1.1e-51 201.4
Lac5g0201 . 29 132 HSF AT1G46264 72.1 3.4e-40 163.3
Lac9g2235 . 9 106 HSF AT1G46264 71.4 2.7e-37 153.7
Lac3g0896 . 10 297 HSF AT3G24520 51.4 6.5e-65 245.4
Lac6g0181 . 168 368 HSF AT4G17750 55.0 1.0e-58 225.3
Lac4g2238 . 53 288 HSF AT4G17750 51.0 1.0e-58 225.3
Lac11g2665 . 43 245 HSF AT4G17750 54.4 1.2e-57 221.9
Lac13g1296 . 15 262 HSF AT4G17750 50.7 1.7e-56 218.0
Lac6g3077 . 114 317 HSF AT4G17750 52.1 1.0e-50 198.7
Lac11g2126 . 52 174 HSF AT4G17750 61.0 1.2e-38 158.7
Lac6g0293 . 20 118 HSF AT4G17750 70.7 2.0e-38 157.9
Lac2g0331 . 20 118 HSF AT4G17750 69.7 3.5e-38 157.1
Lac11g2665 . 44 249 HSF AT5G16820 56.9 3.1e-60 230.3
Lac4g2238 . 54 261 HSF AT5G16820 57.9 1.2e-59 228.4
Lac6g0181 . 169 367 HSF AT5G16820 52.7 1.4e-55 214.9
Lac7g0435 . 328 524 HSF AT5G16820 50.7 4.5e-51 199.9
Lac13g1296 . 11 242 HSF AT5G16820 50.2 5.9e-51 199.5
Lac6g3077 . 115 299 HSF AT5G16820 53.9 8.0e-48 189.1
Lac1g3441 . 9 191 HSF AT5G16820 50.3 1.3e-42 171.8
Lac3g0896 . 11 178 HSF AT5G16820 50.5 4.3e-41 166.8
Lac5g0201 . 11 508 HSF AT1G32330 54.6 1.1e-121 434.5
Lac4g2238 . 42 257 HSF AT1G32330 53.5 9.2e-60 228.8
Lac11g2665 . 32 229 HSF AT1G32330 53.1 3.6e-56 216.9
Lac6g0181 . 157 350 HSF AT1G32330 53.9 8.9e-55 212.2
Lac7g0435 . 326 502 HSF AT1G32330 51.1 2.3e-47 187.6
Lac6g0293 . 20 117 HSF AT1G32330 70.4 1.3e-37 155.2
Lac11g2665 . 44 264 HSF AT3G02990 55.3 1.3e-63 241.5
Lac4g2238 . 54 271 HSF AT3G02990 55.1 2.3e-60 230.7
Lac6g0181 . 169 368 HSF AT3G02990 52.7 2.1e-56 217.6
Lac4g2238 . 42 256 HSF AT2G26150 57.9 6.1e-66 248.8
Lac6g3077 . 98 317 HSF AT2G26150 53.8 4.5e-61 232.6
Lac5g0201 . 13 239 HSF AT2G26150 57.0 7.8e-61 231.9
Lac7g0435 . 326 778 HSF AT4G13980 52.0 1.0e-116 417.9
Lac6g0181 . 157 360 HSF AT5G43840 52.9 2.1e-48 190.3
Lac4g2238 . 14 368 HSF AT3G22830 50.1 6.7e-96 348.6
Lac11g2665 . 32 344 HSF AT3G22830 50.4 8.2e-86 315.1
Lac5g0201 . 25 238 HSF AT3G22830 58.9 1.3e-62 238.0
Lac4g2238 . 41 343 HSF AT3G51910 53.2 1.0e-71 267.7
Lac11g2665 . 32 324 HSF AT3G51910 52.5 4.2e-70 262.3
Lac6g0181 . 157 373 HSF AT3G51910 52.5 7.7e-56 214.9
Lac11g2665 . 32 336 HSF AT3G63350 50.2 3.5e-67 252.7
Lac6g0181 . 157 356 HSF AT3G63350 52.9 7.0e-52 201.8
Lac4g2238 . 55 243 HSF AT1G67970 52.1 1.7e-45 181.0
Lac6g3077 . 109 318 HSF AT5G54070 53.5 7.5e-53 205.3
Lac1g2563 . 2 301 HSF AT4G36990 51.8 2.8e-72 269.6
Lac6g0293 . 17 115 HSF AT5G62020 67.7 1.2e-38 157.9
Lac11g2126 . 75 396 HSF AT4G11660 53.7 8.1e-80 295.0
Lac2g0331 . 16 122 HSF AT4G11660 72.9 6.5e-45 179.1
Lac6g0293 . 16 119 HSF AT4G11660 74.0 1.1e-44 178.3
Lac1g2563 . 2 100 HSF AT4G11660 73.7 1.4e-42 171.4
Lac3g1474 . 20 118 HSF AT4G11660 66.7 1.7e-37 154.5
Lac7g2097 . 12 110 HSF AT4G11660 68.7 3.8e-37 153.3
Lac7g2097 . 17 216 HSF AT2G41690 54.7 3.9e-51 199.1
Lac1g1310 . 45 231 HSF AT2G41690 54.1 9.7e-50 194.5
Lac2g0331 . 1 338 HSF AT1G46264 52.2 6.1e-90 328.6
Lac6g0293 . 19 378 HSF AT1G46264 51.6 5.9e-85 312.0
Lac3g1474 . 22 208 HSF AT1G46264 57.5 2.5e-59 226.9
Lac1g2563 . 4 198 HSF AT1G46264 51.2 1.1e-51 201.4
Lac5g0201 . 29 132 HSF AT1G46264 72.1 3.4e-40 163.3
Lac9g2235 . 9 106 HSF AT1G46264 71.4 2.7e-37 153.7
Lac3g0896 . 10 297 HSF AT3G24520 51.4 6.5e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22949 PF00447 HSF_DNA-bind 3.50E-32 CL0123 Lac TF