Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2138 ATGGCTGACCAAAAGCTTCCAATTAATGACACCCAAATAGACCAATCTCTTCCTCATCACCCTCTTCCATCAAATCCTAAACCAATTTCCATTGACCCTTTTGTTTCTTCTGTCCCCACATGCCAAAATCCAAACCCAAACCCAAATCCAAAACCCCAACAGGCTGAGCAACAAATATTGGTCAAGAAATTACTTCCACTTCCACTTCCACCACCACCTCCATCATCATCCATGGCTTCTTCAACAATATCTTCTTCTTCTTCCTCTTCCTCTTCTTCAACCAAGAGGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACGCGCATATGGCTCGGAACGTTTCCAACTGCCGAGATGGCTGCCGCCGCTTACGACGTCGCTGCTCTCGCCCTCCGAGGTGGCGACGCCGTCCTCAACTTCCCCTCCTCCATTGCCTCCTACCCTGTTCCCGCCTCGACTTCCCCGGTCGACATACGCTCGGCCGCCTCCACTGCTGCTGCTGCCACCGCCGCGAATGCGTCGAAAAAGGCCCGAGCTTGTAGTAGTAGTAGTAACATTGAAGATGCGACGACGGTCGGCGGTGGAGAAGATTGTAGTAATACGACGTCGTTGGGGATGGAGGAGTTTGTGGATGAGGAGGAGATTTTTGGGCTGCCGAGTTTGCTGGCGGACATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCGCCGCCGTCCGATGACTCGATGGAAAATTCCGATGGAACGGAAAGTTTGTGGAGCTACTTTTGA 822 53.16 MADQKLPINDTQIDQSLPHHPLPSNPKPISIDPFVSSVPTCQNPNPNPNPKPQQAEQQILVKKLLPLPLPPPPPSSSMASSTISSSSSSSSSSTKRHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALRGGDAVLNFPSSIASYPVPASTSPVDIRSAASTAAAATAANASKKARACSSSSNIEDATTVGGGEDCSNTTSLGMEEFVDEEEIFGLPSLLADMAEGMMVSPPRMNSPPPSDDSMENSDGTESLWSYF 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37419033 37419854 + Lag0032776.1 Lac11g2138 587996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2138 273 MobiDBLite consensus disorder prediction 255 273 - -
Lac11g2138 273 ProSiteProfiles AP2/ERF domain profile. 99 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2138 273 Pfam AP2 domain 99 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2138 273 MobiDBLite consensus disorder prediction 244 273 - -
Lac11g2138 273 SMART rav1_2 99 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2138 273 FunFam Ethylene-responsive transcription factor 2 98 156 - -
Lac11g2138 273 SUPERFAMILY DNA-binding domain 98 157 IPR016177 GO:0003677(InterPro)
Lac11g2138 273 MobiDBLite consensus disorder prediction 78 98 - -
Lac11g2138 273 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2138 273 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 77 272 IPR045277 GO:0003700(InterPro)
Lac11g2138 273 MobiDBLite consensus disorder prediction 1 99 - -
Lac11g2138 273 CDD AP2 98 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2138 Lac-Chr11:37419033 Lac5g2895 Lac-Chr5:47149366 2.00E-43 dispersed
Lac11g2138 Lac-Chr11:37419033 Lac11g2139 Lac-Chr11:37442562 2.30E-28 tandem
Lac5g0687 Lac-Chr5:8529544 Lac11g2138 Lac-Chr11:37419033 3.30E-49 transposed
Lac11g2138 Lac-Chr11:37419033 Lac5g2894 Lac-Chr5:47137112 2.80E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22950 PF00847 AP2 1.00E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2138 - - - 0.0