Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2139 ATGGATTGGTTCAGCCAATTTTCTGATCCCACTCCTTATTATGGAAATTCTATTTACACGTCGGAATCGTCGTCGACGTTGTCCGATGCCGAAACGCCGCCGCAGGCGGTGGCACACTCCGACGAGGAGATTATATTGGCATCGGACCGACCGAAGCGACGGGCCGGTCGACGAATTTTCAAAGAGACGAGGCATCCTGTATACAGAGGGGTGCGACGGAGGAATAATGACAAATGGGTTTGTGAGCTGAGAGAACCAAATAAGAAGACGAGAATTTGGCTCGGAACTTATCCGACTGCTGAGATGGCAGCACGTGCACACGACGTGGCTGCACTCGCATTGAGAGGGAAGTCAACTTGTCTCAATTTCGCTGACTCGGCGTGGCGGTTTCCGATTCCGTCTAGTGATGACCCCTCTGTGATCAGAGCGGCCGCGACGAGAGCGGCGAATGAGTGTAAGGATGAGGATTGCAATGTAGGTGGGAGAGAAGATGACGTCGTTTTGGATCAGCCCATAACAGAGCTAGATCGACACGATTACGTCGACGATGAGGCTTTGTCGAATATGCCTATGTTGCTTGCCAGCATGGCAGAGGGACTTCTTCTTTCTCCTCCTTCTTTTTGTGCATATGATGACATGGAGCTAGATGACATGACTATGAGCAATGATGTGTCATTGTGGAACTTTTAG 690 50.43 MDWFSQFSDPTPYYGNSIYTSESSSTLSDAETPPQAVAHSDEEIILASDRPKRRAGRRIFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSTCLNFADSAWRFPIPSSDDPSVIRAAATRAANECKDEDCNVGGREDDVVLDQPITELDRHDYVDDEALSNMPMLLASMAEGLLLSPPSFCAYDDMELDDMTMSNDVSLWNF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37442562 37443251 + Lag0032777.1 Lac11g2139 587997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2139 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 229 IPR045277 GO:0003700(InterPro)
Lac11g2139 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Lac11g2139 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2139 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2139 Lac-Chr11:37442562 Lac5g2894 Lac-Chr5:47137112 2.70E-54 dispersed
Lac11g2138 Lac-Chr11:37419033 Lac11g2139 Lac-Chr11:37442562 2.30E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22951 PF00847 AP2 1.60E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2139 - - - 0.0