Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2149 ATGCAGTCTCCTTGTATTAGAGAGGCCTCACAGGCCTGCCTTCGAGGCTGCTGTCGACCCCCGTTTCTCAGTCTTCCTGATTCTTCGCAGTCTGCATTACATAGGTCATCTGCAGTTTCAATTCCTGCATACAATTTTCATGGAGCAACGGAGACGTCTCTTCACCCAAATGCTCGCTTCTCCGATCACGAATCGATTCCTTCTCTAAAGGATGCGTTCACTTACTTCATTAGAGCATACCCTCTGTACATTGACACACAACAGATCGATCGAATCCGAGCTGAGGAATATAATCATCTTGCTCTCTCCAAACATGTCTGTCTCGATTACAATGGCCAGTGTCTCTTTTCCTATGCTCAACAGCAGAGTTTCCCAATGGCTCCAGCTGTTGCTTCTTCTTCTTCTCCATCAGGCTCCCCTCCTCCATTTCTGCATTCCCCGGGATCACCATTCTTTAACATCACCCATAGATCAGTGAAACCAAACCCCCAAGTGGAGAATGGTGGTCAAGAATTGGATTTCGAGTCCAGAATCAGAAGTAGAATCATGAAGTTTATGAACTTATCAGAAGATGATTATGCTATGGTGTTTACAGCCAATCAATCATCAGCCTTCAAACTTCTAGCAGACACTTACCCTTTTCAGCACAACAGAAATTTGGTCACTGTTTATGATCACAAGAGCGAGGCAGTTGAATTGATGGTTGAAAGCTCCAAGAAGAAAGGAGCAAGAATCAACTCAGCTGAGTTCATATGGCCAAATCTAACCATCTCTACGGGAAAATTAAGAAGACTAATCGTCGGTAAACGAAGGAAGAGGAAGTCTAAAAGGGGGCTATTTGTTTTCCCACTTCAATCAAGATTAACAGGAACTCCATATTCATATCAATGGCTGAACATAGCTCGGGAAAATGACTGGGATGTCTGCCTAGATACATGTGCACTCGGACCAAAAGACATGGAAACTTTAGGCCTCTCCCTCTTCAAGCCTGAATTTCTAATTTCTTCATTCTACAAAGTTTTTGGCGAAAACCCATCAGGGTTTGGCTGTTTGTTCATCAAGAAATCCAATGTCTCATTCATGGAGAGCTTAATCACCTCCCCTGCAAATATCGGAGTTATAAGCCTTATCTCAACATCACCATCACTCCCATTTCCAGAAGAACCAGAGACAACAGACATCAGAACTCAACAAATCTCAAATCCCAGCATACAAAATCAAAATCTCGCTTCACCAGAGTCGTCAAATTTACCTGAAATCGTAGAAGCCACTGAAATTGAAGAGGAAGAACTCTCAATCACAGGAATCGTCGAATTGGGGACGCCCTTGGAATCGGCTCGATCAACAATCACAGAAATGAGAATAAACTGCAGAGGCTTGGATCACGCAGATTCAGTAGGTCTAAGACTAATAAGCATTAGGGCAAGGTACCTGATCAATTGGCTCACGAATGCATTGACGAATCTTCAGCACCCAAATGCAGAAGAAGGGGTTGGCCAAGCCCTAGTCAGAATCTACGGCCCCAAAATCGAAATCAATCGAGGACCCGCCGTGGCATTCAACGTGTTCGATTGGAAAGGGGAGAAGGTGGATCCAGGTCTGGTTCAGAAGCTGGCCGATCGGAGCAACATATCGGTGAGCCATGGTTTGTTGAGGCAAGTAAGTTTCTGGGACAAGAATGAGGAGGAAATTGAGATGAGAAAGGAGAGAGTGGGTGAGGAAGGGGAAAGAATGGATAGAACAGAGAAACGACATTGCTGGATCTCTGTGGTGACAGCGGGTGTTGGATTTTTGACGAATTTTGAAGATGTTTACAGGGTTTGGGCGTTTGTTTCCAGGTTTTTGGATGCAGATTTTGTGGAGAAAGAGAGATGGAGATATATGGCTCTTAATCAAAAGACCATTGAGGTTTAG 1914 44.25 MQSPCIREASQACLRGCCRPPFLSLPDSSQSALHRSSAVSIPAYNFHGATETSLHPNARFSDHESIPSLKDAFTYFIRAYPLYIDTQQIDRIRAEEYNHLALSKHVCLDYNGQCLFSYAQQQSFPMAPAVASSSSPSGSPPPFLHSPGSPFFNITHRSVKPNPQVENGGQELDFESRIRSRIMKFMNLSEDDYAMVFTANQSSAFKLLADTYPFQHNRNLVTVYDHKSEAVELMVESSKKKGARINSAEFIWPNLTISTGKLRRLIVGKRRKRKSKRGLFVFPLQSRLTGTPYSYQWLNIARENDWDVCLDTCALGPKDMETLGLSLFKPEFLISSFYKVFGENPSGFGCLFIKKSNVSFMESLITSPANIGVISLISTSPSLPFPEEPETTDIRTQQISNPSIQNQNLASPESSNLPEIVEATEIEEEELSITGIVELGTPLESARSTITEMRINCRGLDHADSVGLRLISIRARYLINWLTNALTNLQHPNAEEGVGQALVRIYGPKIEINRGPAVAFNVFDWKGEKVDPGLVQKLADRSNISVSHGLLRQVSFWDKNEEEIEMRKERVGEEGERMDRTEKRHCWISVVTAGVGFLTNFEDVYRVWAFVSRFLDADFVEKERWRYMALNQKTIEV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37543639 37545552 + Lag0032787.1 Lac11g2149 588007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2149 637 SUPERFAMILY PLP-dependent transferases 162 367 IPR015424 -
Lac11g2149 637 Gene3D - 155 393 IPR015421 -
Lac11g2149 637 Gene3D Aspartate Aminotransferase, domain 1 446 623 IPR015422 -
Lac11g2149 637 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 60 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2149 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2149 Lac-Chr11:37543639 Lac2g0268 Lac-Chr2:2022097 1.70E-29 dispersed
Lac11g2149 Lac-Chr11:37543639 Lac11g1465 Lac-Chr11:24702617 2.70E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25