Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2156 ATGGTGAGAGGAAAGACTCAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTGACCTTTTCAAAGCGCAGAAATGGACTGCTCAAAAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAACTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGAACGGTATCAGAACAGAACCAAAGAATTGATGTCCAGCAACAACCAAGCTTTAGAAGATGTGCAGTTGGAGAAGGAAATTGACTCCTTTAGCATGACCAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAACTGATGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGCTGCAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACCAAAATTAGGTCAAGAAAGTTTCAATTGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAGAATGCAGCACTGCAGATGAAGGTTGGAAATGAAAGATCAAAAAAAGCAGAAACCAAGCAGAGATCAGAATCAAACCACCAAGAGACTATGGATGTGGAAACTGAACTGTTCATAGGACCACCAGAAAGAAGAAGCAACAATGGCTTCCAGTAG 645 40.47 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSPRGKLYEFSNCSMNKTIERYQNRTKELMSSNNQALEDVQLEKEIDSFSMTKKLQHLEVCKRKLMGDGLDLCSIEELQQLERQIERSLTKIRSRKFQLLKEEIMKLKEEEKMLLEENAALQMKVGNERSKKAETKQRSESNHQETMDVETELFIGPPERRSNNGFQ 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37612216 37617638 + Lag0032794.1 Lac11g2156 588014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2156 214 Coils Coil 66 86 - -
Lac11g2156 214 MobiDBLite consensus disorder prediction 174 194 - -
Lac11g2156 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac11g2156 214 Coils Coil 122 142 - -
Lac11g2156 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac11g2156 214 Coils Coil 144 171 - -
Lac11g2156 214 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac11g2156 214 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 MobiDBLite consensus disorder prediction 172 214 - -
Lac11g2156 214 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g2156 214 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Lac11g2156 214 Pfam K-box region 89 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2156 Lac-Chr11:37612216 Lac7g0288 Lac-Chr7:2240055 3.60E-48 dispersed
Lac11g2156 Lac-Chr11:37612216 Lac5g2878 Lac-Chr5:47035658 2.30E-31 wgd
Lac11g2156 Lac-Chr11:37612216 Lac9g1189 Lac-Chr9:27714336 5.40E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22953 PF01486 K-box 6.90E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2156 - - - 0.0