Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2156 | ATGGTGAGAGGAAAGACTCAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTGACCTTTTCAAAGCGCAGAAATGGACTGCTCAAAAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAACTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGAACGGTATCAGAACAGAACCAAAGAATTGATGTCCAGCAACAACCAAGCTTTAGAAGATGTGCAGTTGGAGAAGGAAATTGACTCCTTTAGCATGACCAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAACTGATGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGCTGCAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACCAAAATTAGGTCAAGAAAGTTTCAATTGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAGAATGCAGCACTGCAGATGAAGGTTGGAAATGAAAGATCAAAAAAAGCAGAAACCAAGCAGAGATCAGAATCAAACCACCAAGAGACTATGGATGTGGAAACTGAACTGTTCATAGGACCACCAGAAAGAAGAAGCAACAATGGCTTCCAGTAG | 645 | 40.47 | MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSPRGKLYEFSNCSMNKTIERYQNRTKELMSSNNQALEDVQLEKEIDSFSMTKKLQHLEVCKRKLMGDGLDLCSIEELQQLERQIERSLTKIRSRKFQLLKEEIMKLKEEEKMLLEENAALQMKVGNERSKKAETKQRSESNHQETMDVETELFIGPPERRSNNGFQ | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 37612216 | 37617638 | + | Lag0032794.1 | Lac11g2156 | 588014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2156 | 214 | Coils | Coil | 66 | 86 | - | - | |
Lac11g2156 | 214 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Lac11g2156 | 214 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | CDD | MADS_MEF2_like | 3 | 71 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lac11g2156 | 214 | Coils | Coil | 122 | 142 | - | - | |
Lac11g2156 | 214 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac11g2156 | 214 | Coils | Coil | 144 | 171 | - | - | |
Lac11g2156 | 214 | SUPERFAMILY | SRF-like | 3 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 189 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac11g2156 | 214 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | MobiDBLite | consensus disorder prediction | 172 | 214 | - | - | |
Lac11g2156 | 214 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g2156 | 214 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 79 | - | - | |
Lac11g2156 | 214 | Pfam | K-box region | 89 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2156 | Lac-Chr11:37612216 | Lac7g0288 | Lac-Chr7:2240055 | 3.60E-48 | dispersed | |
Lac11g2156 | Lac-Chr11:37612216 | Lac5g2878 | Lac-Chr5:47035658 | 2.30E-31 | wgd | |
Lac11g2156 | Lac-Chr11:37612216 | Lac9g1189 | Lac-Chr9:27714336 | 5.40E-12 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22953 | PF01486 | K-box | 6.90E-21 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2156 | - | - | - | 0.0 |