Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2159 ATGGAAGATCAAGCCCTTCCTCAGCGGCCCCATCAATCATCTTCTAGGGCTTCCCCTCCTTCTTCCTCATCTTCCTCTTCTTCCCACCTCAATTTGCCACCTACAATGTCACGACCCTCTCACTCTCTCGAAACCCTAACCCCTTCTCGCCAAATCGACCGCATGATCAATATCAATCACCATTTGTCGCCTTCCCGAGCTATCTACTCTGATAGGTTCATTCCCAGTAGATCTGGTTCTAATTTTGCCCTTTTTGATCTTTCCCCTGTCTCCAATTCCCACTCCGATGCTCGCGAGGATACCTCCACTGCCTACGCTACGCTTCTTCGGACCGCTCTCTTTGGCCCCGATGCTGGAGTGATTCCTCCCGCTACTCCTGAGAAGAGGAGCTCCCCAATGTGCCTTCCCAATCATAATATTTTTCGCTATAAGACCGAGACCAGGAGGTCAATGCACTCCCTCTCGCCTTTTGGCTTTGATGATGCCGCTCCTGGGGTTAATCCTACTCCGGTTAAGACTCCACGGAAGGTCCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTTCAAGATGATTTTTATCTCAATCTTGTCGATTGGTCTTCGCATAATGTGCTCGCTGTTGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGTAGTAAGGTCACCAAGTTATGTGACTTGGGAATTGATGACAGTGTCTGTTCGGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAACGGAAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGCCATCGGTTACGAGTTGGAGCCTTAGCTTGGAGCTCATCTCTTCTATCATCTGGTAGCCGGGACAAAAGTATCCTTCAGAGAGATATCCGGGCCCAGGATGATTTTGTGACTAAACTATCTGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATACGATAACCGTGAATTAGCATCAGGAGGAAATGATAACAGATTGTTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACAGCTGCTGTAAAAGCTATAGCATGGTCTCCTCATCTTCATGGACTACTCGCATCAGGGGTGGAACTGCAGATCGATGTGTGCAATCTGGCATGGTCTAAGAATGTCAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAGATAATAGTCTGGAGATATCCAACTATGTCCAAGTTGGCAACATTGACTGGCCATACTTTCAGAGTTCTTTATCTTGCTATATCTCCTGATGGACAGACCATTGTAACAGGTGCTGGTGATGAAACTTTGAGATTTTGGAATGTCTTTCCTTCGCCAAAATCTCAGAACACAGACAATGAAATCGGAGCATCCTTCCTTGGACGAACCACCATCCGTTAA 1440 46.88 MEDQALPQRPHQSSSRASPPSSSSSSSSHLNLPPTMSRPSHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDLSPVSNSHSDAREDTSTAYATLLRTALFGPDAGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDAAPGVNPTPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGVELQIDVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDNEIGASFLGRTTIR 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37649980 37653227 - Lag0032797.1 Lac11g2159 588017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2159 479 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Lac11g2159 479 MobiDBLite consensus disorder prediction 7 43 - -
Lac11g2159 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 455 - -
Lac11g2159 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 455 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 MobiDBLite consensus disorder prediction 1 43 - -
Lac11g2159 479 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 286 IPR024977 -
Lac11g2159 479 Pfam WD domain, G-beta repeat 310 345 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 Pfam WD domain, G-beta repeat 418 454 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SUPERFAMILY WD40 repeat-like 188 455 IPR036322 GO:0005515(InterPro)
Lac11g2159 479 Gene3D - 171 459 IPR015943 GO:0005515(InterPro)
Lac11g2159 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Lac11g2159 479 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 43 465 IPR033010 GO:0005680(PANTHER)|GO:0010997(PANTHER)|GO:0010997(InterPro)|GO:0031145(PANTHER)|GO:0097027(InterPro)|GO:1904668(InterPro)|GO:1905786(PANTHER)|GO:1990757(PANTHER)
Lac11g2159 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 178 219 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 265 302 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 222 262 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 415 454 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 348 387 IPR001680 GO:0005515(InterPro)
Lac11g2159 479 SMART WD40_4 306 345 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2159 K03364 - - csv:101220762 885.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2159 Lac-Chr11:37649980 Lac8g2529 Lac-Chr8:43075952 1.20E-147 dispersed
Lac11g2159 Lac-Chr11:37649980 Lac5g0923 Lac-Chr5:13227816 1.70E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37