Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2161 ATGGCTTCTCTTTCAGGCTTCAAATTGTCCGTCGTGGCATTGGTTTTCGCCATCTCCACCACATCAACCCTCGCCGTGTTCCGACCCAGCCCCTGGCAGCTCGCCCATGCCACGTTCTATGGCGACGAAACTGCCTCCGCCACCATGGGAGGTGCGTGTGGATATGGAAACTTGTTTACGAACGGCTATGGAACTGATACAGTGGCATTGAGCTCGACACTGTTCAACAATGGCTACGCCTGCGGAACTTGCTTCCAAATCAAATGCGTGCAGTCGAAGGCGTGCTATGCCAACGTGCCGTTCACCACGGTGACGGCGACCAACCTGTGCCCGCCGAATTGGTCGCAGGACTCCAACGCCGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCCGCCTTCATGAAGATCGCTTTGTGGAAGGCCGGAATTGTCCCCGTCCAATACCGCAGGGTTCCATGTGTAAGAAAAGGAGGTGTTCGATTCAGCTTCCAAGGAAATGGTTACTGGTTATTAGTGTATGTGATGAACGTAGGAGGAGGAGGCGATGTGTATTCAATGGCTGTGAAAGGAAGCAAAACAGGATGGATAACGATGAGCCATAACTGGGGAGCTTCGTATCAAGCTTTTGCCTCGTTGGGTGGCCAATGCCTCTCTTTCAGAATCACTTCTTACACAACCAGAGAGACAGTCACTTTTTGGAATGTCGTTCCTGCAAATTGGCAAGTCGGGTTGACTTACAATTCTAATCTCAACTTCCGTTGA 777 51.99 MASLSGFKLSVVALVFAISTTSTLAVFRPSPWQLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIALWKAGIVPVQYRRVPCVRKGGVRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFASLGGQCLSFRITSYTTRETVTFWNVVPANWQVGLTYNSNLNFR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37673880 37675785 - Lag0032799.1 Lac11g2161 588019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2161 258 Pfam Lytic transglycolase 67 153 IPR009009 -
Lac11g2161 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Lac11g2161 258 Gene3D - 163 258 IPR036749 -
Lac11g2161 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Lac11g2161 258 SUPERFAMILY Barwin-like endoglucanases 31 181 IPR036908 -
Lac11g2161 258 Gene3D - 16 158 IPR036908 -
Lac11g2161 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Lac11g2161 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Lac11g2161 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 CDD DPBB_EXPA_N 31 158 - -
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Lac11g2161 258 PANTHER EXPANSIN-A15 12 253 IPR002963 GO:0009664(InterPro)
Lac11g2161 258 SMART dpbb_1 67 153 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2161 Lac-Chr11:37673880 Lac5g0571 Lac-Chr5:6438462 2.00E-122 dispersed
Lac11g2161 Lac-Chr11:37673880 Lac9g2465 Lac-Chr9:43539314 2.30E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2161 - - - 0.0