Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2192 ATGCCCACTCCCTTCCCCCTCCCTTTCACACCAGGGATTTCCATCTCCAACAACACCAATTCCACCACTCCAACAATTCCGAAGAGGAGCACAGCGCCACCACCACCCGTCTCAAACGAGATCGTGACGACGACGACCTCAACAACCCCAACTCCGCCCCCAACAGCGCCGAACAAGCCCAAGCCTCCCATTATCATCACTCGCGACAGTGCCAACGCCCTTCGGACTCATGTCATCGAAGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGCACCGGCACCGTCACCAACGTCACCCTCCGCCAGCCTGCCTCCCCCGGTGCAATTGTCAACCTACACGGCCGCTTCGAGATCTTATCCCTCGCTGGCTCCTTCCTCCCTCCGCCGGCCCCTCCGGCTGCCACCAGCTTGACCATTTACCTCGCCGGCGGTCAGGGTCAGGTCGTCGGCGGTAGCGTCGTCGGTACTTTGATCGCTTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTACGAACGCCTCCCGTTGGAGGACGACGACCAGCCGCCGATGCCGCCGCTCCAGGGCGGCGGCGGAATTGGGTCTCCCGACGAAGTTGGACAGTCCCAACCGCCGCAAACGGCGCATCATCAACAGCAGCAACAACAGCAGCAACTTCTCGCCGACGGAAATGGGCCATTATTTCACGGTTTGCCTCCGAATCTTTTAAACTCAATTCAAATGCCGCCGTCGGAAGCAGCTTATTGGGCTACTGCTCGACCGCCGTACTAA 831 61.01 MPTPFPLPFTPGISISNNTNSTTPTIPKRSTAPPPPVSNEIVTTTTSTTPTPPPTAPNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHHQQQQQQQQLLADGNGPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38051316 38052210 - Lag0032830.1 Lac11g2192 588050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2192 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 203 - -
Lac11g2192 276 MobiDBLite consensus disorder prediction 219 242 - -
Lac11g2192 276 MobiDBLite consensus disorder prediction 1 63 - -
Lac11g2192 276 MobiDBLite consensus disorder prediction 195 256 - -
Lac11g2192 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 53 276 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lac11g2192 276 FunFam AT-hook motif nuclear-localized protein 74 201 - -
Lac11g2192 276 PIRSF ESCAROLA 16 276 IPR014476 GO:0003680(InterPro)
Lac11g2192 276 MobiDBLite consensus disorder prediction 10 27 - -
Lac11g2192 276 CDD DUF296 75 142 IPR005175 -
Lac11g2192 276 Gene3D - 74 201 - -
Lac11g2192 276 ProSiteProfiles PPC domain profile profile. 71 207 IPR005175 -
Lac11g2192 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 187 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2192 Lac-Chr11:38051316 Lac7g0365 Lac-Chr7:2817085 1.60E-61 dispersed
Lac11g2192 Lac-Chr11:38051316 Lac11g2200 Lac-Chr11:38130348 7.60E-19 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2192 - - - 0.0