Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2200 ATGGAGGGAAGAGATGGTGGCGCAAGTAGTGGGGTTACTGTGGTGGGATCAGATGCTCCGTCGGAGTACCAAATAGCTCCGAGAACCGCCGATAACCCGCCGCAGACCGGTGGATCAACGCCGTCGACGACCCAGCCAGCTTCGACGCCGTCGGCCTCGGCTCCGCCGCCTACGGCGGCCTCCACAGTTCCAGGAAAGAAGAAAAGAGGACGGCCGAGAAAATATGGACCCGATGGCTCTGTCTCTGTGGCTCTGTCTCCGAAGCCGATATCGTCCTCGGTACCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAGGGGGAAGGTACGGCCGGCGAGCGCCGTGAGCAAAAGCAAGTTTGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCGCTACGGGCGAGGATGTCACGATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCGATATGCATTTTGTCTGCGAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGGGTCGCTTTGAAATACTGTCCTTGTCTGGCTCATTCATGCCTAGTGACAATGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACATGAGCAGAAACCTAAAAAGCCAAAACAAGACACGAATTCAACAGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGATCCTAAGTCCAACCTCTCGCCTTCCAGTTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAACGATTCAAGGAATAAGCCAACTGATATCAATGTATCCCTACCCAGTGCATGA 969 52.32 MEGRDGGASSGVTVVGSDAPSEYQIAPRTADNPPQTGGSTPSTTQPASTPSASAPPPTAASTVPGKKKRGRPRKYGPDGSVSVALSPKPISSSVPPPVIDFSTEKRGKVRPASAVSKSKFEVDNLGDWVPCSVGANFTPHIITVATGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVSLPSA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38130348 38133832 + Lag0032838.1 Lac11g2200 588058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2200 322 Gene3D - 139 269 - -
Lac11g2200 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 301 IPR039605 GO:0003680(InterPro)
Lac11g2200 322 MobiDBLite consensus disorder prediction 254 322 - -
Lac11g2200 322 MobiDBLite consensus disorder prediction 1 98 - -
Lac11g2200 322 MobiDBLite consensus disorder prediction 286 322 - -
Lac11g2200 322 MobiDBLite consensus disorder prediction 28 58 - -
Lac11g2200 322 ProSiteProfiles PPC domain profile profile. 134 275 IPR005175 -
Lac11g2200 322 FunFam AT-hook motif nuclear-localized protein 1-like 139 271 - -
Lac11g2200 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 256 - -
Lac11g2200 322 CDD DUF296 138 229 IPR005175 -
Lac11g2200 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2200 Lac-Chr11:38130348 Lac7g0322 Lac-Chr7:2496090 1.90E-90 dispersed
Lac11g2192 Lac-Chr11:38051316 Lac11g2200 Lac-Chr11:38130348 7.60E-19 proximal
Lac11g2200 Lac-Chr11:38130348 Lac5g2849 Lac-Chr5:46810279 7.00E-72 wgd
Lac11g2200 Lac-Chr11:38130348 Lac5g0514 Lac-Chr5:5834969 2.20E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2200 - - - 0.0