Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2208 ATGCTCGCTTCCGAGCTGAAAATCTTATTGAACAACTCTGTAAATGTAAAGCAGGCAACTCAAATTCATGCCCACATTCTCGTCAATGGGCTTCGAAATCTCGAGTCTCTCTTGGTCCGTCAAATCACTCGCTCTGAGTTCACTTGCGCCAGAACTGTATCCCGCTATCTCCAACGAATCCTTCACCATTCGCAAAACCCAGATGCTTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATCGAAGCAATCTCCCATTATGTTCATATGCAGAGATTGGGACTGCATCCAAGCAGTTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGTAGGATTATGTGTAAGTTTGTTGGGAGATATGTTCATGGTCAGGTTTATAAATTGGGGTTTTGTCGCTGTGTTTACGTGCAAACTGCCCTTGTGGATTTTTACTCAAAATTGGGTGATATGGGTTTTTCTCGGAAGGTGTTTGATGATATTATTGAGAAAAATGTGGTTTCGTGGAATTCTATATTGTCTGGTTATGTGAAAGTTGGGAACTTAGTTGATGCTCAGAAAGTGTTCGATGAAATGCCTGAGAAAGATGTTATATCTTGGAATTCAATGTTGACTGGATTCGCCAATTCTCTAAATATGGATCAAGCGTCCTGTTTATTTCAACAGATGGGAGAGAAAAGCTCGGCTTCTTGGAATGCAATGATCAGTGGCTATGTGAACTGTGGAGACATGAAGTCTGCAAGAAACCTGTTTGATGTAATGCCCAAGAGAAATAATGTTTCATGGATTACACTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGGTTCTGCTCGTGAGCTCTTTGATAAGATGGGTGAGAAAGAGCTTCTCTCTTTTAACGCCATGATTGCTTGCTATTCACAAAATAGCCTGCCTAACGAAGCATTGGAGCTGTTCAACCAAATGCTTCAACCACAAGTGAATATCCAACCCGATGAGATAACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGGAATCTGAATTATGTTACTTGGATTGAATCGTATATGGAAAAACTTGGGATTGAGTTGGATGATCATTTGGCAACTGCATTAGTAGATTTGTATGCAAAATCTGGGAACATCGAGAGGGCGTTTGAGCTGTTCAATGGTCTGAAAAGGAAGGATCTGGTTGCTTATTCAGCTATGATCTTTGGATGTGGGATAAATGGTAAGGCGTTCGATGCAATCGGGTTATTCGAAGAGATGCTGAGTGTAAACATCTGCCCGAATCTAGTGACGTATGCCGGGCTTCTTACGGCATATAACCATGCCGGTTTAGTTGATGAAGGTTACCTTTGCTTCTCGTCCATGAAGGACCATGGACTTGAGCCATTAGCTGATCATTATGGAATCATGGTGGATTTGTTGGGCAGAGCAGGGCGGCTAGAAGAAGCACATGAGCTTATAAAGAGCATGCCAGTGCAGCCTAATGCTGGTGTCTGGGGAGCCTTGCTTCATGCTTGCAGGTTACATAACAATGTTGAGCTCGGTGAGAAAGCGGCTCGGAATTGCTCGAAGTTGGTGACCGATACAACCGGATATCGGTCTCTTCTGGCCAACATCTACTCTTCTGTGGAGAGGTGGGATGATGCTAAGAGACTGAGAAAAGCCATGGAAAATAAAGTATTTGCCAAGATATCTGGCTGTAGTTGGATGGAGCAGTCTGAAATCTGA 1737 43.64 MLASELKILLNNSVNVKQATQIHAHILVNGLRNLESLLVRQITRSEFTCARTVSRYLQRILHHSQNPDAFSWGCAVRFFSQNGQFIEAISHYVHMQRLGLHPSSFAVSSTLRACGRIMCKFVGRYVHGQVYKLGFCRCVYVQTALVDFYSKLGDMGFSRKVFDDIIEKNVVSWNSILSGYVKVGNLVDAQKVFDEMPEKDVISWNSMLTGFANSLNMDQASCLFQQMGEKSSASWNAMISGYVNCGDMKSARNLFDVMPKRNNVSWITLIAGYSKLGEVGSARELFDKMGEKELLSFNAMIACYSQNSLPNEALELFNQMLQPQVNIQPDEITFASIISACTQLGNLNYVTWIESYMEKLGIELDDHLATALVDLYAKSGNIERAFELFNGLKRKDLVAYSAMIFGCGINGKAFDAIGLFEEMLSVNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKDHGLEPLADHYGIMVDLLGRAGRLEEAHELIKSMPVQPNAGVWGALLHACRLHNNVELGEKAARNCSKLVTDTTGYRSLLANIYSSVERWDDAKRLRKAMENKVFAKISGCSWMEQSEI 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38167913 38169649 - Lag0032846.1 Lac11g2208 588066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2208 578 Gene3D Tetratricopeptide repeat domain 126 230 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 Gene3D Tetratricopeptide repeat domain 294 372 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Lac11g2208 578 PANTHER OS07G0578800 PROTEIN-RELATED 232 289 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lac11g2208 578 Pfam PPR repeat 469 493 IPR002885 -
Lac11g2208 578 Pfam PPR repeat 202 230 IPR002885 -
Lac11g2208 578 Pfam PPR repeat 264 292 IPR002885 -
Lac11g2208 578 Pfam PPR repeat 234 262 IPR002885 -
Lac11g2208 578 Pfam PPR repeat 71 100 IPR002885 -
Lac11g2208 578 Pfam PPR repeat family 296 341 IPR002885 -
Lac11g2208 578 Pfam PPR repeat family 168 200 IPR002885 -
Lac11g2208 578 Pfam PPR repeat family 396 442 IPR002885 -
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lac11g2208 578 Gene3D Tetratricopeptide repeat domain 231 293 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 370 398 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 433 465 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 264 291 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 470 493 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 171 201 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 234 262 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Lac11g2208 578 NCBIfam pentatricopeptide repeat 296 321 IPR002885 -
Lac11g2208 578 Pfam E motif 512 574 IPR046848 -
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Lac11g2208 578 SUPERFAMILY TPR-like 70 291 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 Gene3D Tetratricopeptide repeat domain 376 578 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 Gene3D Tetratricopeptide repeat domain 16 121 IPR011990 GO:0005515(InterPro)
Lac11g2208 578 FunFam Pentatricopeptide repeat-containing protein At4g22760 370 576 - -
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Lac11g2208 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2208 Lac-Chr11:38167913 Lac13g0893 Lac-Chr13:7334131 2.70E-66 dispersed
Lac11g2208 Lac-Chr11:38167913 Lac5g2088 Lac-Chr5:39530936 2.10E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31