Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2232 ATGAAAAGCCTCAAAAATTTCGTCAATTTCTTGTTCCCACGGCGGTGGATTCACTTCGCCGATCACCAATCCAGCTTCCTCTTCACCTTCTTCGCCGGTCTACTCATTTTCCTCTACATCAAACTCCGGCGGCGGCGCCTGCCACTGCCACCGGGTCCACCCGGCTTTCCGCTGCTCGGAAACCTCCCGTTTCTCGACCCCGAACTTCACTCCTACTTCGCCGAACTGGGCCGGAAATACGGCCCGATTGTGAAGCTTCAGCTCGGCAAAAAGATCGGCATAATCGTCAGCTCACCCTCCGTGGCACGTGAGGTGTTAAAAGACCACGATGTCACGTTCGCCAATCGCGACGTTCCTCAGGCCGGCAGAGCCGCCTCGTACGGCGGTTCCGACATAGTTTGGACCCCGTACGGACCTGAGTGGCGAATGTTGCGAAAAGTCTGTGTGATCAAGATGCTCAGCAGCGCCAGTTTAGACTCTGTCTACGAGCTCCGCCGTAGAGAGGTCAGAAACACCGTCGCCCACCTGTACCGGCGAGCCGGCGAGCCGGTCAACATCGGAGAGCAGGGCTTTCTGACCATTTTCAACGTGGTTACGAGCATGTTGTGGGGTGGGTCAGTGGAAGGAGACGAGAGAGACGGCCTCGCGGCTGAGTTCAGAGAGACGGTTTCGGACATGACTGAGCTACTGGGAAAGCCAAATGTTTCGGACTTCTTTCCGAGCTTGGCCGTTTTCGATCTCCAAGGCATTGAGAAGCAGATGCGTGAGCTCACTCCCAGATTTGATACCATTTTCGAGAAGATGATCGATCAACGACTGAAAATTGCCGGCCGGGAGGGCGGCGCTAACGGGAAGAAGAGTGATTTCTTGCAGTTCTTGCTCGAGCTGAAAGATGAAGGCGACGCCAAAACTCCTCTCACCATGATCCACCTTAAAGCCCTGCTCATGGACATGGTGCTGGGTGGGACAGACACATCGTCAAATACCATAGAGTTTGCAATGGCGGAGATGATGAAGAACCCAAAAACTCTGAAGAAAGCGCAAGAAGAACTAGCGGCGGTAGTCGGAGAAGAGAACATGGTAGAAGAGTCGCACATCCAGAGTCTGCCATATCTCAAAGCCGCAATGAAAGAAACCTTGCGTTTGCACCCAATTCTACCGCTGCTGGTGCCGCACTGCCCGAGCGAGACCACCATGATCGCCAATTACGCAATTCCAAAGGGCTCTCGAGTGTTCGTCAACGTCTGGGCTATTCAGAGAGACCCCAATCAATGGGAAAATCCATTGGTGTTCGATCCAGAGAGGTTTCTGAACAGTAAATGGGATTTCGGTGGAAGTGATTTTCGCTACTTTCCGTTCGGCTCCGGCAGAAGAAACTGCGCAGGGATAGCCATGGCGGAACGAATGTTCATGTATTTGCTTGCTACGCTTTTGCATTCGTTCGATTGGAAATTGGAAGATGGGCAGAAACTGGAGATTGAGGAGAAATTTGGGATTGTTTTGAAGAAGAAGACGCCTCTTGTTGTCATCCCAACGCCCAGGCTGTCGGATCCCGCTCTGTATCAGTAA 1569 52.84 MKSLKNFVNFLFPRRWIHFADHQSSFLFTFFAGLLIFLYIKLRRRRLPLPPGPPGFPLLGNLPFLDPELHSYFAELGRKYGPIVKLQLGKKIGIIVSSPSVAREVLKDHDVTFANRDVPQAGRAASYGGSDIVWTPYGPEWRMLRKVCVIKMLSSASLDSVYELRRREVRNTVAHLYRRAGEPVNIGEQGFLTIFNVVTSMLWGGSVEGDERDGLAAEFRETVSDMTELLGKPNVSDFFPSLAVFDLQGIEKQMRELTPRFDTIFEKMIDQRLKIAGREGGANGKKSDFLQFLLELKDEGDAKTPLTMIHLKALLMDMVLGGTDTSSNTIEFAMAEMMKNPKTLKKAQEELAAVVGEENMVEESHIQSLPYLKAAMKETLRLHPILPLLVPHCPSETTMIANYAIPKGSRVFVNVWAIQRDPNQWENPLVFDPERFLNSKWDFGGSDFRYFPFGSGRRNCAGIAMAERMFMYLLATLLHSFDWKLEDGQKLEIEEKFGIVLKKKTPLVVIPTPRLSDPALYQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38358842 38360594 - Lag0032870.1 Lac11g2232 588090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2232 522 SUPERFAMILY Cytochrome P450 50 514 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PANTHER OS08G0547900 PROTEIN 31 522 - -
Lac11g2232 522 CDD CYP76-like 78 511 - -
Lac11g2232 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac11g2232 522 FunFam Cytochrome P450 - like protein 39 508 - -
Lac11g2232 522 Gene3D Cytochrome P450 38 510 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 Pfam Cytochrome P450 50 506 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 101 122 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac11g2232 522 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2228 Lac-Chr11:38317043 Lac11g2232 Lac-Chr11:38358842 5.90E-118 dispersed
Lac11g2232 Lac-Chr11:38358842 Lac11g2234 Lac-Chr11:38394344 2.00E-241 dispersed
Lac11g2230 Lac-Chr11:38343552 Lac11g2232 Lac-Chr11:38358842 8.60E-136 proximal
Lac11g2232 Lac-Chr11:38358842 Lac11g2233 Lac-Chr11:38369189 1.80E-247 tandem
Lac10g2927 Lac-Chr10:43858790 Lac11g2232 Lac-Chr11:38358842 6.80E-32 transposed
Lac10g2280 Lac-Chr10:34857255 Lac11g2232 Lac-Chr11:38358842 2.10E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2232 - - - 0.0