Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2233 | ATGGAACCCAGTTCCAATTTCCTTCAAAGTCTCATCGAATCCCTCAATCTCTTGTTTCCATGGCAGTGGATCGAAAACGCCGATAACCAAACGCGCTATCTTCTCACCCTCTCCACCGGGCTTCTAGTTCTCTTTTACGTCAAATATTGGCGGCGGCGATTGCGGCTGCCGCCGGGTCCTCCCGTCGTTCCACTGATCGGAAATCTTCCGTTTCTCGATCCAGAGCTTCACACTTACTTCAGGGAGTTGGGTAAAAAATACGGCCCAATTGTAAAGCTCCAACTCGGCAGGAAGATTGCCATAGTCGTCAACTCACCCTCCGTGGCACGTGAGATGTTGAAGGACAACGATATCACGTTCGCCAACCGCGACATTTCTCAGGCCGGGAGAATCGCCACGTACGGCGGTTACGACATAACTTGGACCCCGTACGGACCCGAGTGGCGGATGTTGAGAAAAGTTTGTGTGCTGAAGATGCTGAACAACGCCACGTTGGACTCTGTGTACGAGCTCCGGCGTAGAGAGGTGAGAAACACCGTGGCTCACCTGTACCGGCGAGCCGGGTCGGCGGTGAACATGGGAGAGCAGGGCTTTTTGACCATTTTCAACGTGGTTACGAGCATGTTGTGGGGTGGGTCGTCAGTGGAAGGGGACGAGAGGGACGCGGTTGCGGCTGAGTTAAGAGAGATGGTTTCGGACATAACTGAGCTGCTGACTAAACCTAATATTTCGGACTTCTTCCCGAGCTTGGCCCGTTTCGATCTCCAAGGAATTGAGAAGCAAATGCTTGAGCTTGTCCCAAGATTTGATACCATCTTCGAAAAGATGATTGACCAACGATTGAGAATGGCCGATGGGGACGAGAATGCGAAGACGAATGATTTCTTGCAGTTCTTACTAAAGGTCAAAGATGAAGGCGATTCCAAAACACCTCTCACTATGGTCCAACTCAAAGCCTTGCTCATGGATATGGTAATAGGTGGAACGGACACATCCTCAAACACCATTGAGTTTGCAATGGCGGAGATGATGAAGAACCCAAGAGTTCTAAGGAAAGCCCAGGAAGAGCTAGCCGCTGTGGTCGGAGAAGACAACATCGTAGAAGAGTCCCATATTCAGAGCTTGCCATATCTCAAAGCCGTAATGAAAGAAACCTTGCGTCTGCATCCAGCTCTGCCGCTGCTTGTGCCGCACTGCCCGAGCGAGACCGCCATCATCTCCAATTACGTAGTCCCAAAGGGCTCTCGAGTGTTCATCAACGTCTGGGCCATTCAGCGAGACCCCGAACAGTGGGAAAACCCTTTGGAGTTCGACCCAGACAGGTTCTTGAATAGTAAGTGGGATTTCAGTGGGAGTGATTTTCGTTACTTTCCATTCGGAGCTGGCAGAAGAAACTGCATTGGGGTAACCATGGCGGAAAGAACGTTCATGTATTTACTTGCTACGCTTCTTCATTCGTTCGATTGGAGATTGAAAGAAGGTGAGAAATTGGAGACTGAGGAGAAATTTGGGACTGTTTTGAAGAAGAAGACGCCTCTGGTCGCCATCGTGACGCCCAGACTATCTAATCCCACTCTATACCAGTAA | 1587 | 50.28 | MEPSSNFLQSLIESLNLLFPWQWIENADNQTRYLLTLSTGLLVLFYVKYWRRRLRLPPGPPVVPLIGNLPFLDPELHTYFRELGKKYGPIVKLQLGRKIAIVVNSPSVAREMLKDNDITFANRDISQAGRIATYGGYDITWTPYGPEWRMLRKVCVLKMLNNATLDSVYELRRREVRNTVAHLYRRAGSAVNMGEQGFLTIFNVVTSMLWGGSSVEGDERDAVAAELREMVSDITELLTKPNISDFFPSLARFDLQGIEKQMLELVPRFDTIFEKMIDQRLRMADGDENAKTNDFLQFLLKVKDEGDSKTPLTMVQLKALLMDMVIGGTDTSSNTIEFAMAEMMKNPRVLRKAQEELAAVVGEDNIVEESHIQSLPYLKAVMKETLRLHPALPLLVPHCPSETAIISNYVVPKGSRVFINVWAIQRDPEQWENPLEFDPDRFLNSKWDFSGSDFRYFPFGAGRRNCIGVTMAERTFMYLLATLLHSFDWRLKEGEKLETEEKFGTVLKKKTPLVAIVTPRLSNPTLYQ | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 38369189 | 38371491 | - | Lag0032871.1 | Lac11g2233 | 588091 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2233 | 528 | FunFam | Predicted protein | 325 | 515 | - | - | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 420 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 108 | 129 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 456 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 466 | 489 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 84 | 103 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 379 | 397 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 200 | 218 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | SUPERFAMILY | Cytochrome P450 | 57 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | CDD | CYP76-like | 85 | 516 | - | - | |
| Lac11g2233 | 528 | PANTHER | OS08G0547900 PROTEIN | 33 | 528 | - | - | |
| Lac11g2233 | 528 | Gene3D | Cytochrome P450 | 49 | 524 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | P450 superfamily signature | 466 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | PRINTS | P450 superfamily signature | 457 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | Pfam | Cytochrome P450 | 57 | 511 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2233 | 528 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 459 | 468 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2233 | Lac-Chr11:38369189 | Lac11g2235 | Lac-Chr11:38413453 | 3.50E-206 | dispersed | |
| Lac11g2232 | Lac-Chr11:38358842 | Lac11g2233 | Lac-Chr11:38369189 | 1.80E-247 | tandem | |
| Lac11g2233 | Lac-Chr11:38369189 | Lac11g2234 | Lac-Chr11:38394344 | 1.50E-249 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2233 | - | - | - | 0.0 |