Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2234 | ATGGAACCCACTTCCAATTTCCTTCAAACTCTCAATGATTCCGACAATTCCACGCGCTTTCTTCTCACCCTCTTCGCCGGTTTTCTTCTCCTTCTTCTTTATCTCAAATTCTTGCGGCGGCGCTTGCGGCTGCCACCGGGTCCCCGGGGCGTTCCGCTGCTCGGAAATCTGCCGTTTCTCGACCCCGAACTTCACACTTACTTCACCCAACTGGGCCGGAAATACGGTCCGATTGTAAAGCTGCAACTCGGCAGTAAGATCGGCATAATCGTCAACTCACCCTCCGTGGCACGTGAGGTCTTGAAAGACCACGATGTCACGTTCGCCAATCGCGACGTTCCTCAGGCCGGCAGAGCCGCCACGTACGGCGGTCACGACGTAACTTGGACCCCGTACGGACCCGAGTGGCGGATGTTGAGAAAAGTTTGTACGATCAAGATGCTCAGCAACGCCACGCTGGACTCTGTGTACGAGCTCCGGCGTCGAGAGGTGAGAAACACCGTGGCTCATCTGTACCGGCTGGCTGGGTCGCCGGTGAACATCGGAGAGCAGGGCTTTTTGACCATTTTCAACATCGTTACGAGCGTGTTGTGGGGTGGGTCGGTGGAAGGGGACGAGAGGGACCGAGTTGCGGCCGAGTTCAGAGAGACGGTTTCGGACATAACTGAGTTGCTGGGTAAGCCTAACGTTTCGGACTTTTTTCCGAGCTTGGCTCGATTCGATCTCCAAGGCGTTGAGAAGCAAATGCTTGAGCTCGTCCCGAAATTCGACAACATCTTCGAAAAGATGATCGATGAGCGACTGAAAATGGGCGGTGGGGACGAGAGTGGGAAGAAAAATGATTTCTTGCAGTTCTTACTAAAGGTCAAAGATGAAGGCGATTCCAAAACACCTCTCACTATGGTCCAACTCAAAGCCTTGCTCATGGATATGGTCGTAGGGGGAACAGAAACATCCTCAAACACCATTGAGTTTGCGATGGCGGAGATGCTAAAGAACCCAGAAGTTCTAAAGAAAGCCCAGCAAGAAGTAGCCGCTGTGGTCGGAGAAGACAACATCGTAGAAGAGTCCGATACTCAAAGCTTGCCATATCTGAAAGCCGTAGTGAAAGAAACCTTTCGTCTGCATCCACCTCTGCCGCTGCTTGTGCCGCACTCCCCGAGCGAGACCACCATCGTCTCCAATTACGCAGTCCCAAAGGGCTCTCGAGTGTTCATCAACGTCTGGGCCATTCATCGAGACCCCGATCACTGGGAAAACCCTTTGGAGTTCGACCCAGACAGGTTCTTGAATAGTAACTGTGATTTCAGTGGGAGTGATTTTCGTTTCCTTCCATTTGGAGCTGGCAGAAGAAACTGCGCAGGGATAGCCATGGCCGAGAGAATGTTGATGCATGTTCTTGCCACGCTTCTGCATTCGTTTGATTGGAAATTGAAAGAAGGCGAGAGATTGGAGACTGAGGCCAAGTTTGGGATTGTTTTGAAGAAGAAAACGCCTCTCGTTGTCATATTGACGCCTACGCTATCTAACCCCACTCTATACCAGTAA | 1548 | 51.81 | MEPTSNFLQTLNDSDNSTRFLLTLFAGFLLLLLYLKFLRRRLRLPPGPRGVPLLGNLPFLDPELHTYFTQLGRKYGPIVKLQLGSKIGIIVNSPSVAREVLKDHDVTFANRDVPQAGRAATYGGHDVTWTPYGPEWRMLRKVCTIKMLSNATLDSVYELRRREVRNTVAHLYRLAGSPVNIGEQGFLTIFNIVTSVLWGGSVEGDERDRVAAEFRETVSDITELLGKPNVSDFFPSLARFDLQGVEKQMLELVPKFDNIFEKMIDERLKMGGGDESGKKNDFLQFLLKVKDEGDSKTPLTMVQLKALLMDMVVGGTETSSNTIEFAMAEMLKNPEVLKKAQQEVAAVVGEDNIVEESDTQSLPYLKAVVKETFRLHPPLPLLVPHSPSETTIVSNYAVPKGSRVFINVWAIHRDPDHWENPLEFDPDRFLNSNCDFSGSDFRFLPFGAGRRNCAGIAMAERMLMHVLATLLHSFDWKLKEGERLETEAKFGIVLKKKTPLVVILTPTLSNPTLYQ | 515 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 38394344 | 38396831 | - | Lag0032872.1 | Lac11g2234 | 588092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 303 | 320 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 407 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 188 | 206 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 323 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | Gene3D | Cytochrome P450 | 35 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | CDD | CYP76-like | 73 | 503 | - | - | |
| Lac11g2234 | 515 | FunFam | Predicted protein | 312 | 502 | - | - | |
| Lac11g2234 | 515 | Pfam | Cytochrome P450 | 45 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac11g2234 | 515 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | P450 superfamily signature | 314 | 331 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2234 | 515 | PANTHER | OS08G0547900 PROTEIN | 18 | 515 | - | - | |
| Lac11g2234 | 515 | SUPERFAMILY | Cytochrome P450 | 45 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2230 | Lac-Chr11:38343552 | Lac11g2234 | Lac-Chr11:38394344 | 6.30E-131 | dispersed | |
| Lac11g2232 | Lac-Chr11:38358842 | Lac11g2234 | Lac-Chr11:38394344 | 2.00E-241 | dispersed | |
| Lac11g2234 | Lac-Chr11:38394344 | Lac12g2491 | Lac-Chr12:41936321 | 1.40E-98 | dispersed | |
| Lac11g2233 | Lac-Chr11:38369189 | Lac11g2234 | Lac-Chr11:38394344 | 1.50E-249 | tandem | |
| Lac11g2234 | Lac-Chr11:38394344 | Lac11g2235 | Lac-Chr11:38413453 | 3.10E-199 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2234 | - | - | - | 0.0 |