Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g2235 | ATGGAACCCACCTCCCATTTCCTTCAAATTAGTCTCTTTGATTCTTTAAGTTTCTTGTTTCCATGGCGGTGGATTGACAATGGCTATAACCAATCGCTTTTTCTTTCCACGTTCTTTGCTGGTTTTCTAGTTTTTCTTTACACTAAAACTCGGCGGCGCTGCTTGGCGCCGCCGCCGCCGCCGGGTCCACGTGGGATTCCGCTACTCGGAAATCTTCCATTTATGAAACCAGAACTCCACACTTATTTTACCGAACTCGGTCAGAAATACGGCCCAATCGTAAAGCTCCAACTTGGTAGCAAGATTTGTATAGTGGTGAACTCGGCCTCTGTGGCACGTGAAGTTCTCAAGGACCACGACCTCACCTTCGCCAACCGCGACGTTCCTTTCGTCGGCAAAGCCTCTTCCTACGGCGGCTGCGATATACTTTGGAGCCCCTATGGACCCGAATGGCGGATGTTGAGAAAAATAAGCATGGTCCATATGCTTAGTAACGCCGCTTTGGACTCCGTTTGTGAGCTTCGACGGAGAGAGGTTAGAAACACCGTGCGTTATTTTTATAGTCAAATTGGGTGTCCGATTGATGTAGGAGAGCAAAGTTTTGTGACGTTGCTTAATGTCTTTACTGCTATGCTTTGGGGCGGGACGGTGGACGGAGAAGAGAGGAAGAGTATTGGGGCGGAGCTGAGAGAGGCGGCGGCGGAGATGGTAGACTTATTGATGAAACCTAATGTTTCCGACTTCTTTCCGAGATTGGCGCGTTTCGATATCCAAGGAATCGAGAAGCGAATGCTTGAATTAGTCCGGAGATATGACAATATCTTTACCAAAATCATCGATCAAAGATTGGAAATTGCCAATAAGGGTGGCGGTGCAAGTGCACAAGAAAAGGATTTCTTGCAGTTCTTGCTGGAGAAGAAAGATGAAGGAGATTCCAAGATTCCTTTCACCTCCAACCATCTTAAAGCCTTGCTCATGGACATGGTTATTGGCGGGACAGACGCACCGTCAAGCATCGTAGAGTTTGCGATGGCTGAGATAATGAAGAACCCACAAATTCTCAAAAAAGCACAACAAGAATTGGCTGCCGTCGTTGGAGAAGAGAACATCGTAGAAGAGTCCCACATTCAAAGTTTGTCATATCTTCAAGCCATAATGAAAGAAACCCTACGTTTTCATCCAGCGCTGCCATTGCTGGCCCCTCACAGCCCAACGGAGACCACTGTCATCTCCAACTACACAATCCCCAAGGCCTCTCAAGTTCTAATTAACGCGTGGGCGATTCACCGAGACCCGTGCTCTTGGGACAAGCCATTAGAGTTCAAGCCGGCGAGGTTTCTGAATAATACAAGTTTGGATTACAATGGGAGCAATTTCTCTTACATTCCCTTCGGGTCTGGCAGAAGAATGTGTGCTGGGATAGCCATGGCGGAGAGGATTGTTTTGTATTTACTTGCTACGATGTTGCATTCATTTGATTGGAAGCTGAAAGAAGGTGAGAAACTAGATGTTTCAGAGAAGTTTGGGACTGTGTTGAAGAAAAACACGCCTCTTGTCGCCATTCCGACCCTGAGACTGGCTAACCCATCTCTCTATCAGTGA | 1602 | 47.19 | MEPTSHFLQISLFDSLSFLFPWRWIDNGYNQSLFLSTFFAGFLVFLYTKTRRRCLAPPPPPGPRGIPLLGNLPFMKPELHTYFTELGQKYGPIVKLQLGSKICIVVNSASVAREVLKDHDLTFANRDVPFVGKASSYGGCDILWSPYGPEWRMLRKISMVHMLSNAALDSVCELRRREVRNTVRYFYSQIGCPIDVGEQSFVTLLNVFTAMLWGGTVDGEERKSIGAELREAAAEMVDLLMKPNVSDFFPRLARFDIQGIEKRMLELVRRYDNIFTKIIDQRLEIANKGGGASAQEKDFLQFLLEKKDEGDSKIPFTSNHLKALLMDMVIGGTDAPSSIVEFAMAEIMKNPQILKKAQQELAAVVGEENIVEESHIQSLSYLQAIMKETLRFHPALPLLAPHSPTETTVISNYTIPKASQVLINAWAIHRDPCSWDKPLEFKPARFLNNTSLDYNGSNFSYIPFGSGRRMCAGIAMAERIVLYLLATMLHSFDWKLKEGEKLDVSEKFGTVLKKNTPLVAIPTLRLANPSLYQ | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 38413453 | 38416513 | - | Lag0032873.1 | Lac11g2235 | 588093 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g2235 | 533 | CDD | CYP76-like | 88 | 522 | - | - | |
| Lac11g2235 | 533 | Pfam | Cytochrome P450 | 60 | 515 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 340 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 111 | 132 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 320 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 383 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 424 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | E-class P450 group I signature | 87 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | FunFam | Putative cytochrome P450 superfamily protein | 321 | 523 | - | - | |
| Lac11g2235 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac11g2235 | 533 | SUPERFAMILY | Cytochrome P450 | 60 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | Gene3D | Cytochrome P450 | 46 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | P450 superfamily signature | 331 | 348 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g2235 | 533 | PANTHER | OS08G0547900 PROTEIN | 34 | 533 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2233 | Lac-Chr11:38369189 | Lac11g2235 | Lac-Chr11:38413453 | 3.50E-206 | dispersed | |
| Lac11g2235 | Lac-Chr11:38413453 | Lac3g0568 | Lac-Chr3:4384681 | 1.00E-88 | dispersed | |
| Lac11g2234 | Lac-Chr11:38394344 | Lac11g2235 | Lac-Chr11:38413453 | 3.10E-199 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g2235 | - | - | - | 0.0 |