Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2250 ATGTCATCCTCTTCTTCTTCTCCTACTCCTCCTCCTACTTCTACTACTTCTACTGCTGCTTTGTCTCAGCAGCAGCAGCAGCTGGACCACCACCTTCCCTCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTCACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTCTTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTATGGAAAATATCCCAACTCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTCGGCCTCCAGTCATCAATAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATCAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTTTCCCATTTCTAA 708 47.88 MSSSSSSPTPPPTSTTSTAALSQQQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNIMENIPTPNSNYLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLIKDNGFYASANVGVSHF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38533276 38535243 + Lag0032888.1 Lac11g2250 588108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2250 235 PANTHER PROTEIN YABBY 6-RELATED 35 206 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Lac11g2250 235 MobiDBLite consensus disorder prediction 130 150 - -
Lac11g2250 235 SUPERFAMILY HMG-box 141 190 IPR036910 -
Lac11g2250 235 CDD HMG-box_SF 151 187 - -
Lac11g2250 235 MobiDBLite consensus disorder prediction 1 27 - -
Lac11g2250 235 Gene3D High mobility group box domain 142 210 IPR036910 -
Lac11g2250 235 Pfam YABBY protein 35 197 IPR006780 GO:0007275(InterPro)
Lac11g2250 235 FunFam Axial regulator YABBY 142 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2250 Lac-Chr11:38533276 Lac9g2746 Lac-Chr9:45626609 1.20E-44 dispersed
Lac11g2250 Lac-Chr11:38533276 Lac5g0469 Lac-Chr5:5300588 2.30E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22959 PF04690 YABBY 3.60E-71 CL0114 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2250 K25796 - csv:101214748 410.994