Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2250 ATGTCATCCTCTTCTTCTTCTCCTACTCCTCCTCCTACTTCTACTACTTCTACTGCTGCTTTGTCTCAGCAGCAGCAGCAGCTGGACCACCACCTTCCCTCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTCACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTCTTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTATGGAAAATATCCCAACTCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTCGGCCTCCAGTCATCAATAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATCAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTTTCCCATTTCTAA 708 47.88 MSSSSSSPTPPPTSTTSTAALSQQQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNIMENIPTPNSNYLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLIKDNGFYASANVGVSHF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38533276 38535243 + Lag0032888.1 Lac11g2250 588108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2250 235 PANTHER PROTEIN YABBY 6-RELATED 35 206 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Lac11g2250 235 MobiDBLite consensus disorder prediction 130 150 - -
Lac11g2250 235 SUPERFAMILY HMG-box 141 190 IPR036910 -
Lac11g2250 235 CDD HMG-box_SF 151 187 - -
Lac11g2250 235 MobiDBLite consensus disorder prediction 1 27 - -
Lac11g2250 235 Gene3D High mobility group box domain 142 210 IPR036910 -
Lac11g2250 235 Pfam YABBY protein 35 197 IPR006780 GO:0007275(InterPro)
Lac11g2250 235 FunFam Axial regulator YABBY 142 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2250 K25796 - - csv:101214748 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2250 Lac-Chr11:38533276 Lac9g2746 Lac-Chr9:45626609 1.20E-44 dispersed
Lac11g2250 Lac-Chr11:38533276 Lac5g0469 Lac-Chr5:5300588 2.30E-24 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2250 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 58.7 2.1e-43 172.9
Lac9g2746 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.9 6.8e-56 214.5
Lac11g2250 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 3.5e-44 175.6
Lac3g0792 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.7e-43 171.0
Lac11g2250 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.8 5.8e-51 198.4
Lac13g0189 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.7 1.7e-39 160.6
Lac3g0792 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.8e-63 239.6
Lac6g2925 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.5e-62 236.5
Lac9g2746 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 2.5e-49 192.6
Lac11g2250 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 5.4e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22959 PF04690 YABBY 3.60E-71 CL0114 Lac TF