Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2260 ATGTCAGTTTACAGAGACGAGGATCCTCGCATCCATGGCATCAGGACTAAGATTCGTGTTGTGCCTAATTTCCCTCAGCCAGGTATCATGTTCCAAGACATAACCACTCTGCTACTCGACCCCAAAGCATTCAAAGATACAGTTGATTTGTTCGTTGAGCGGTACAAAGGGAAGAACATTTCGGTTGTTGCAGGAGTTGAAGCTCGAGGTTTTATATTTGGCCCTCCGATTGCATTGGCTATAGGAGCAAAATTTGTTCCTTTAAGGAAACCGAGGAAGCTACCTGGAGAAGTTATTTCTGAAAAGTACATATTGGAATATGGAAGTGATTGCCTGGAGATGCATGTTGGAGCCGTCAAACCACATGAACGGGCTTTAGTGGTGGACGACTTGATTGCAACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGAACGTGTTGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGATTTAAAGGGTCGGGAGCGGTTGAACGGTAAGCCATTGTTCGTGCTGGTAGAGTACCACTAA 549 44.99 MSVYRDEDPRIHGIRTKIRVVPNFPQPGIMFQDITTLLLDPKAFKDTVDLFVERYKGKNISVVAGVEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVISEKYILEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLRAAMNLLERVGAEVIECACVIELPDLKGRERLNGKPLFVLVEYH 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38663151 38667437 + Lag0032898.1 Lac11g2260 588118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2260 182 Gene3D - 2 182 IPR029057 -
Lac11g2260 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 180 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Lac11g2260 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Lac11g2260 182 CDD PRTases_typeI 48 180 IPR000836 -
Lac11g2260 182 SUPERFAMILY PRTase-like 13 175 IPR029057 -
Lac11g2260 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Lac11g2260 182 NCBIfam adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Lac11g2260 182 Pfam Phosphoribosyl transferase domain 49 165 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2260 K00759 - - csv:101216186 349.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2260 Lac-Chr11:38663151 Lac9g1052 Lac-Chr9:24745468 6.60E-35 dispersed
Lac6g0253 Lac-Chr6:2060904 Lac11g2260 Lac-Chr11:38663151 6.70E-70 transposed
Lac6g0626 Lac-Chr6:5314061 Lac11g2260 Lac-Chr11:38663151 3.50E-68 transposed
Lac11g2260 Lac-Chr11:38663151 Lac5g0451 Lac-Chr5:5121035 1.10E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac9g1758 . 77 557 PRT Gene Family AT2G16570 84.9 4.7e-241 831.2
Lac9g1758 . 77 557 PRT Gene Family AT4G34740 85.3 1.6e-241 832.8
Lac9g1758 . 56 530 PRT Gene Family AT4G38880 72.3 6.7e-197 684.5
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac11g2260 . 6 104 PRT Gene Family AT4G22570 80.8 1.3e-43 172.9
Lac5g0451 . 1 104 PRT Gene Family AT4G22570 77.1 1.2e-41 166.4
Lac6g0626 . 11 100 PRT Gene Family AT4G22570 78.9 3.1e-37 151.8
Lac11g2260 . 1 96 PRT Gene Family AT4G12440 82.3 2.8e-40 161.8
Lac5g0451 . 1 96 PRT Gene Family AT4G12440 80.2 2.0e-38 155.6
Lac6g0626 . 4 99 PRT Gene Family AT4G12440 78.1 4.9e-37 151.0
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac8g2223 . 1 186 PRT Gene Family AT1G71750 66.5 6.9e-70 261.2
Lac2g1551 . 63 516 PRT Gene Family AT1G55810 85.7 2.0e-226 782.3
Lac11g0184 . 19 468 PRT Gene Family AT1G55810 73.8 1.9e-192 669.5
Lac2g1551 . 113 515 PRT Gene Family AT3G27440 77.2 6.1e-185 644.4
Lac11g0184 . 80 470 PRT Gene Family AT3G27440 75.7 6.3e-174 607.8
Lac11g0184 . 1 470 PRT Gene Family AT3G27190 86.2 9.3e-238 820.1
Lac2g1551 . 50 515 PRT Gene Family AT3G27190 74.4 4.1e-209 724.9
Lac1g1971 . 14 291 PRT Gene Family AT3G53900 68.7 2.8e-107 386.0
Lac2g1551 . 48 516 PRT Gene Family AT4G26510 84.8 1.6e-234 809.3
Lac11g0184 . 10 468 PRT Gene Family AT4G26510 75.4 3.8e-204 708.4
Lac11g0184 . 1 470 PRT Gene Family AT5G40870 86.2 3.6e-237 818.1
Lac2g1551 . 50 518 PRT Gene Family AT5G40870 73.2 3.5e-208 721.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139