Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2280 ATGGGCAGTAGAACAAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGACTTGAATCTCTCCTCTGCTCTTCAAAACCTAAGAGCGTATAACATTGCTACCGGCAACGCTCCACCGACCGATGATCAACCGCCTCCTGTCGTGAAGAAGAACGAGAATCGGAAACGCCGCCGGGAGCCAGAACTGTCAGGTAATCCAAAATATGACGTTGGAAACAGTGACGGACCTATGTCTCATCAAGATTACATTGAAAGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACGCTTACGGAAGATGTTTTGGGAACTTCTAGCTTGGGCTTGAACTTGGTAGAATATGAAAGTGATGAGAGCTCGTCTTCAGAAAGTGCAGTAAAGCCAGATCATCAAAATTCCAGTCTCTTGAATGAATACAAGGAAGTTAAGAGTAAAACTGAGCAACGTTTTGCCATTGCGGGAGAACCTGTTTGTGTAGTATGTGGTAGATATGGAGAATACATATGCAATGAAACCAATGACGACATCTGCAGCATGGAGTGCAAATTCAAGCTTTTGGAAATTCTTAAACATAGTGAGGAGCCCTCAAACTGTGAAGTGAAAGATGTTGCATTACCAGAAACTAAATATATCCTGCCTTCCCCAGAGTTCGGGGAGGACACCTGGGATTATAAGAACCATCGGTGGTCCAAAAAGAAATCCAATCTTTGTACTTATGAATGCTGGAAATGTCAAAAGCCGGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGTAATGCCACAAAATACTTCCAATCCTGTACCCGGCGATCTCCTTGGACTATATAAAAGATGTTACCATATAGGAAAGAATTTGTCAAATGCGCTGTGCAATGAATGCAGCTGTTCATTTAGTTTGGCGACATGTCTTGACTGTAGTACTGTTTACTGTGACAGTGCAGGTCATCTAAACGAGCATATACACTCACACCCAACTCATGGACTATATTACTCGCATAAACTCAAACGTCTTGTAAAATGCTGCAAATCAACATGCAGGGTGACTGACATCAAGGATCTTCTGGTGTGTCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTATGATATGTATACTGCATCTTGGAAAGGAGCTGGACTTTCAATCATATCAGGTTCCATTTGCTGCGAAGATCACTTTGCCTGGCATCGCATGAACTGCTTCAATGCAGATGTAGAGGACACTGCCTATATCATCAAAAGGAACGCGCAAAAAGGCAAGTCCATTTCTATTAGTAAAAGGTCAAAATTGAAACTGAAAACATTAACCCCCTTCCCCTTCGTCTTCTCCTTCTTCCCTTCGTCTTCTCCTCCTTCGTCTTCTCTTCTCGTGTCCAGCAGCTCCGACGACCCAACGGCTCCGGCGTTTCCTTCTCTCTCGTTCGACTCCGGCGTGTCCAGCAACGTAACTCCGCGGCGTCTTCATCCCCGTTCTAGCAGCTCCAACTCCACGCCGTCTTCATCCCACGGATTTTTCAGGCCGTTTCCAGCAGCTCCGAAGACTCCACCAGTCAAGAAGAGATTGACTGAAACCCAATTAGATATGTTTAGGCAAACTATATTTGGCCCTATTTTAGACAGCAACATATTGTTTAATGGTCAGTTAATCCACCATCTACTACTTAGGGAGGTTGAGGATCCCAGGAAGGATGTAATTAGTTTCGATATATTTGGAAATAAGGTGTCGTTTGGCAAGGAAGAATTCGATCTAATCACCGGATTTAGACACAATAGGAGGATAGTTGATAGACATGAGTCGGGGGTTAGATTGAGGCGTCTGTACTTTAATGACAGTGTCAAAGATACCGTAATGGATGCTGAAAAAAGATTCTTAGACATACAGTTTCAGTCAGATGAAGATGCGGTGAAGGTAGCGCTCGCATATTTTATCGAGCTAGCAATGTTTGGGCGGGAGAGGAAACAAAAATTCAATTGGTCTTTATTGGGTATCGTGGACGATTGGGAGATATTCTGCAATTATGACTGGAGCAAAGTAATTTTTGAGATGACGATAAGGAGTTTGAAGAAAGCACTCAGTCATGCCACCCAAAGAGACGTTGTGGCCGGAGAGGCTAGTCGATTGGAAAGATATAGTCTTTACGGCTTTCCACATGCTTTTCAGGTATGGGCGTATGAGACTATTTCGTCTCTAACGAACCGTGTTGCGAACCGGATGAACCAGGATGCGATCCCACGGTTTTCTCGGTGGTCATGCTCTCATTCTCCTACGTACACCCAACTTAGCAGTGAGATATTTGGCTTGACGGAGGCAAGGGTGACAGTGCAATTGGTTCCAAGCGAAGCAGAGCTCGAACATATGCGTCGTATTGTTTTGCCGCCACAACTACAAGCCCCTGTTTTGCCGCCACAACTAGAGGCCCCTGTTTCGCCACCACATCCAGAGGCCCCTGTTTTGTCGCCACAACCAGATGCAAACCTAGATGATCCTGTGGGGAGTGATAGAGGGTCAGAGGAGGCTGGTTTGGATATGAGTTCACCGAAAAAGGATGTAGAAATGGTTAGGCTCGATGAACAATCGACACACGACGGTCTACCTGAAGGCGTCGGCAAGACCTGCCAATGTGACTGCAAGCAAGCATACGAGTCACTAGACCGACGGATGAAGGTGGTGGAGTCCGATGTAAAAGAGATGAAATCTGACTTAAAGTCGATCAAGAAGTATTTGCGCCGGTTATCTAAGGGTCAAATGGTGGTTGATCCTACCAAGTATTTGGGTCCCGACCGTAGTGCAGCTGCATCAGGTGATGAACCATCCGAGAAAGGAAAGAACCATGTCGTGGAGGAGGGGGGTGGTGGGGTTTCAATAGATGCGATGGTAGAGCACCATGATATGGACAAGGGTGTTGAATCAGACTCCCATGAGGTTGAAGAGATCCCGAAACCTGGAGAAATGGTGAAACGTCGGGGAGATCGGAAAAGAACTCTTTCTTGGAAACTTCGAACTCCGTGGAAGGATACGAGGGAAGGGGCCAAAAAACAAAAGGTCATACCATACAACCCCTTAGTTGAGATTCCTGGGAAGCTTGATAGACGTTTCCAAAAGTGGTTGGACGACACGGAGGTGGACAATGCTCCAAGGAAGACGGCATATGCTTTTAGGGACAAAGTGTGGTTTCAAAACCTTTTGAAACCCTGCTATTGGATGAGCGATGAGGTCATTGACTCACTTTTTATGTTCGTCCGGAAGAAAATGCAACAGCGGGCAGACTTATGTCGTTGGAAGTTTGTCACTGCAGATATTGTTGTTACCGATTTTCTGAGGCGTAGCGACGACATAGCTGAAGAGTTGAAGAAGGTGCAAGATCCTTCGTTGATTACGTACGACTGGAGTACGGCCAATACTGTGATAGACTACGTTTTGGGTCGACACTCGGACCACGATACACATTGGAGTACAGTTGATGCGATCTACATGCCATTGAACCTTGGGGGGAACCATTGGGTTATGGTATGTGCTGATCTCCTAGTGGGAAAATTGAATGTCCTCGATTCATTCATAGCGTTGACATCAGATGCAACCTTGAAGAAAGAGTTGAGCACTCTAGCCACAGTATTGCCAGTGCTACTGTTCAAGTGCGATGTCATGAAAGCGAAGCCACATCTCCCAGTTCACGAATGGGAAATACATAGAGATAGTTCAGTGCCTCAACAAACGAACGGTGGGGATTGTGGTATGTTCGCGGTAAAGTTTTTTGAATATGATGTTACTGGAAGTGAAATAAACACTCTGAATCAAGATAGGATTAATTTTTGTAGACGTCAATTTGCTGTTCAAATTTGGGCCAACAGGCCGATATTTTAG 3882 44.98 MGSRTNFYKNPSISYKKDLNLSSALQNLRAYNIATGNAPPTDDQPPPVVKKNENRKRRREPELSGNPKYDVGNSDGPMSHQDYIERRRKEANKSQPYETLTEDVLGTSSLGLNLVEYESDESSSSESAVKPDHQNSSLLNEYKEVKSKTEQRFAIAGEPVCVVCGRYGEYICNETNDDICSMECKFKLLEILKHSEEPSNCEVKDVALPETKYILPSPEFGEDTWDYKNHRWSKKKSNLCTYECWKCQKPGHLAEDCLVKTSNQVMPQNTSNPVPGDLLGLYKRCYHIGKNLSNALCNECSCSFSLATCLDCSTVYCDSAGHLNEHIHSHPTHGLYYSHKLKRLVKCCKSTCRVTDIKDLLVCHYCFDKAFDKFYDMYTASWKGAGLSIISGSICCEDHFAWHRMNCFNADVEDTAYIIKRNAQKGKSISISKRSKLKLKTLTPFPFVFSFFPSSSPPSSSLLVSSSSDDPTAPAFPSLSFDSGVSSNVTPRRLHPRSSSSNSTPSSSHGFFRPFPAAPKTPPVKKRLTETQLDMFRQTIFGPILDSNILFNGQLIHHLLLREVEDPRKDVISFDIFGNKVSFGKEEFDLITGFRHNRRIVDRHESGVRLRRLYFNDSVKDTVMDAEKRFLDIQFQSDEDAVKVALAYFIELAMFGRERKQKFNWSLLGIVDDWEIFCNYDWSKVIFEMTIRSLKKALSHATQRDVVAGEASRLERYSLYGFPHAFQVWAYETISSLTNRVANRMNQDAIPRFSRWSCSHSPTYTQLSSEIFGLTEARVTVQLVPSEAELEHMRRIVLPPQLQAPVLPPQLEAPVSPPHPEAPVLSPQPDANLDDPVGSDRGSEEAGLDMSSPKKDVEMVRLDEQSTHDGLPEGVGKTCQCDCKQAYESLDRRMKVVESDVKEMKSDLKSIKKYLRRLSKGQMVVDPTKYLGPDRSAAASGDEPSEKGKNHVVEEGGGGVSIDAMVEHHDMDKGVESDSHEVEEIPKPGEMVKRRGDRKRTLSWKLRTPWKDTREGAKKQKVIPYNPLVEIPGKLDRRFQKWLDDTEVDNAPRKTAYAFRDKVWFQNLLKPCYWMSDEVIDSLFMFVRKKMQQRADLCRWKFVTADIVVTDFLRRSDDIAEELKKVQDPSLITYDWSTANTVIDYVLGRHSDHDTHWSTVDAIYMPLNLGGNHWVMVCADLLVGKLNVLDSFIALTSDATLKKELSTLATVLPVLLFKCDVMKAKPHLPVHEWEIHRDSSVPQQTNGGDCGMFAVKFFEYDVTGSEINTLNQDRINFCRRQFAVQIWANRPIF 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38874070 38887089 + Lag0032918.1 Lac11g2280 588138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2280 1293 MobiDBLite consensus disorder prediction 926 956 - -
Lac11g2280 1293 MobiDBLite consensus disorder prediction 837 854 - -
Lac11g2280 1293 SUPERFAMILY Retrovirus zinc finger-like domains 229 258 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac11g2280 1293 MobiDBLite consensus disorder prediction 808 825 - -
Lac11g2280 1293 Coils Coil 887 907 - -
Lac11g2280 1293 MobiDBLite consensus disorder prediction 48 65 - -
Lac11g2280 1293 ProSiteProfiles Ubiquitin-like protease family profile. 1046 1261 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Lac11g2280 1293 MobiDBLite consensus disorder prediction 117 136 - -
Lac11g2280 1293 ProSiteProfiles Zinc finger CCHC-type profile. 244 257 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac11g2280 1293 MobiDBLite consensus disorder prediction 487 523 - -
Lac11g2280 1293 MobiDBLite consensus disorder prediction 34 80 - -
Lac11g2280 1293 Gene3D - 141 199 - -
Lac11g2280 1293 SMART c2hcfinal6 243 259 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac11g2280 1293 Gene3D Adenoviral Proteinase; Chain A 1029 1290 - -
Lac11g2280 1293 MobiDBLite consensus disorder prediction 487 510 - -
Lac11g2280 1293 Pfam HIT zinc finger 158 185 IPR007529 -
Lac11g2280 1293 SUPERFAMILY Cysteine proteinases 1067 1288 IPR038765 -
Lac11g2280 1293 Pfam Domain of unknown function (DUF1985) 560 693 IPR015410 -
Lac11g2280 1293 Pfam Ulp1 protease family, C-terminal catalytic domain 1073 1286 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Lac11g2280 1293 Pfam Zinc knuckle 244 257 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac11g2280 1293 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 1 432 - -
Lac11g2280 1293 MobiDBLite consensus disorder prediction 808 854 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2280 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2280 Lac-Chr11:38874070 Lac12g0521 Lac-Chr12:5614213 0.00E+00 dispersed
Lac2g2929 Lac-Chr2:46656198 Lac11g2280 Lac-Chr11:38874070 4.20E-80 dispersed
Lac4g0674 Lac-Chr4:16748408 Lac11g2280 Lac-Chr11:38874070 2.80E-77 dispersed
Lac9g1414 Lac-Chr9:31970053 Lac11g2280 Lac-Chr11:38874070 9.20E-80 dispersed
Lac10g2632 Lac-Chr10:40451167 Lac11g2280 Lac-Chr11:38874070 1.40E-26 wgd
Lac11g2280 Lac-Chr11:38874070 Lac5g1332 Lac-Chr5:26396299 1.10E-102 wgd
Lac11g2280 Lac-Chr11:38874070 Lac7g2650 Lac-Chr7:45282619 2.90E-201 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g529 . . . . . . Bma07g01597 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0378 . . . Csa05g00417 Chy09g01092 . . Blo19g00254 . Bda09g00099 Bpe08g01430 . . . . . . . . . . . . Bhi12g00440 . . Lac11g2280 Hepe06g1668 . Lcy12g1825 Cla01g00393 Cam01g0410 . . Clacu01g0411 Cmu01g0392 Cre09g2118 Lsi09g00419 . . Cme09g01621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010911 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 31