Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2283 ATGGCTTCTTCTCTAGTACCCAGATCCTTGTTTCAACTTCTTCATCTATTCCCCACGAGCCCTTTTACTTTGGCCCCTCAATTGTTCAAGCACTTCAAAGTTTCTGCAGCTCGAGCTATGAGTTCTGAGTCAACTCAGCGCCTTTTCCAGCTAAAGTTTGATCCACTTACCGGTAACTCGGAGTGGGTAGTCATTGAAGAAGAGGTTGAAGGAGTTTCAGAGAATTCCCAGAAACCCCTTTTGGCGACAACGTCGTATTTGGATATGCTTAATGATGCCACTAGAAACAGAGCTTTCCGCGAAGCCATTGATAAGACTATATCAAAACCTTGCCGTGTTCTTGACATTGGTGCTGGAACTGGCTTGCTATCAATGATGGCTGCACGGGCAATGGACTCTGTCAGGGATGATTCGAAGGGAATGGTTACGGCTTGTGAATCTTATCTTCCAATGGTGAAATTGATGAGGAAAGTCTTGCGTCTTAATGGGATGGAAAGGAAAGTAAAAGTTATTAACAAACGCTCTGATGAACTTCAGTTTGGTGCTGGTATTACTTCTCGAGCCGATGCCCTTGTTAGTGAGATTTTGGACTCAGAACTGTTAGGTGAGGGGCTTATACCAACCTTACAACATGCACATGACAAGCTTTTAGTGGAAAATCCACTGACTGTGCCATACAGAGCAACCATATATGGCCAGCTGGTTGAGAGCACATACTTGTGGAAGCTTCATGATTTACATAACATTGAAGCAAAAGCATCTGATGGCATTCATCTTGTTCCAGTAGGGCTGGATCCTATCATATGTGTTAAGCCCCAGCAATATGCTATGCATTGTGATGCAATCGCAGATGAAGTGAAGCTGCTCTCACAACCCTTCAAAGTTTTTGAATTCGACTTTTGGAAACGTCCAGAGAGTCATGCCGAAAATGAGCTGCATATCAAGGCAACTGACAGTGGTAGAGTTCATGCTGTAGTGTCATGGTGGATGTTGCAGCTCGATCGTGAAGGAACTGTCTTTTATTCCACTGCCCCAAAGTGGATAAGTCCACCTTACAACATAGGAGCTGGTGATTGGTGTGACCATTGGAAACAGTGTGTTTGGTTTATCCCAGGCAATGGTGTGTCAATATCCAAGGATGAAAAAGTTCATTTATGTGCTTCTCATAACGATACTACCTTCTCATATCATCTGAAAGCTCAAATCCCAGGAGGTGAGGTTTTGCCATATGGTGTCGATGTTGAGAATTTTAAACTCATATTGCCACCAGAAAGAATTGCAGTTTATGGAGATAGGGAATGGAGGCTTGCAATGTTAACGGCAATATCAAATGCATTGCAGGGAAGAGCTCCCTCTGCGTGCATGATTGCAGATGATAGTGTTTTCTTAACACTTCTGGTTGCTTGCCTTTCGAAAACAACGCTTGTATTATCATTGTTTCCAGGGATTCGGGAAAAGGGTTCCAAGTATTTGCAGGCCGTTTCTTATGCAAACGGTATCTCTATGGATAGTATAAAAGTTATCGAAAAGAGGAAATCATGCTTGACCGTGCATGATACATCTGAGAAAAAGGTTGACTTTCTTATAAGTGAACCATTCTATTATGGAAATGACAATGCACTCCCATGGCACAACCTACGGTTTTGGAAGGAGCGATCAATGCTCGATCTGGTCCTTTCTGATGATGTGCTAATAATGCCCAATAAAGGCATATTAAGAGCTTGTTTCATGTCATTTCCTGATCTATGGAACAGCCGTCGTCGATTGGGAACAATTGAAGGTTTTGATCACTCAGTTGCAAATGACACTTTGGGAGCTTGTGGTGAGTTACCTGAAGGACAAGAAGGCCCATGTCTGGCTTTCTACATCTGGCAGTGTGGAGAATATGAGGAACTCAGTGAGATATTTACATTGATGGAGTTTGATTTCTCAAAACCAATAAGCCCCTGTAGTGGGAAAAGCCAGGTTAAGGTCAACAGGGCTGGAATATGTCATGGAATAGTTCTGTGGATTGATTGGGTAATGGATTCGAAGAACTCCATTGTCATATCCACAGGCCCAGATAAGAGATACTGGAAACAAGGGGTTAAGCTTCTGACCAACCCTGTGGCAGTCGGAGCTCGAGGTTCCGGTGAGGGCGGAGACCACTGCTCTGCTGTCGTCGAAGCATCCTTTGATCCCTCAAGCGATGTCGAAATGGCGAGGAATGTGACGATCATTGCCCAGAGCAACTCGACGAAATTTTTGGAATGGAATGGATCAAAATGGTAA 2271 43.68 MASSLVPRSLFQLLHLFPTSPFTLAPQLFKHFKVSAARAMSSESTQRLFQLKFDPLTGNSEWVVIEEEVEGVSENSQKPLLATTSYLDMLNDATRNRAFREAIDKTISKPCRVLDIGAGTGLLSMMAARAMDSVRDDSKGMVTACESYLPMVKLMRKVLRLNGMERKVKVINKRSDELQFGAGITSRADALVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVPYRATIYGQLVESTYLWKLHDLHNIEAKASDGIHLVPVGLDPIICVKPQQYAMHCDAIADEVKLLSQPFKVFEFDFWKRPESHAENELHIKATDSGRVHAVVSWWMLQLDREGTVFYSTAPKWISPPYNIGAGDWCDHWKQCVWFIPGNGVSISKDEKVHLCASHNDTTFSYHLKAQIPGGEVLPYGVDVENFKLILPPERIAVYGDREWRLAMLTAISNALQGRAPSACMIADDSVFLTLLVACLSKTTLVLSLFPGIREKGSKYLQAVSYANGISMDSIKVIEKRKSCLTVHDTSEKKVDFLISEPFYYGNDNALPWHNLRFWKERSMLDLVLSDDVLIMPNKGILRACFMSFPDLWNSRRRLGTIEGFDHSVANDTLGACGELPEGQEGPCLAFYIWQCGEYEELSEIFTLMEFDFSKPISPCSGKSQVKVNRAGICHGIVLWIDWVMDSKNSIVISTGPDKRYWKQGVKLLTNPVAVGARGSGEGGDHCSAVVEASFDPSSDVEMARNVTIIAQSNSTKFLEWNGSKW 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38904508 38910815 + Lag0032921.1 Lac11g2283 588141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2283 756 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 492 707 IPR029063 -
Lac11g2283 756 Gene3D Vaccinia Virus protein VP39 418 567 IPR029063 -
Lac11g2283 756 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 65 399 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Lac11g2283 756 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 488 717 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Lac11g2283 756 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 388 IPR029063 -
Lac11g2283 756 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 400 751 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Lac11g2283 756 FunFam Protein arginine N-methyltransferase 7 417 567 - -
Lac11g2283 756 CDD AdoMet_MTases 112 193 - -
Lac11g2283 756 Pfam Arginine methyltransferase oligomerization subdomain 276 393 - -
Lac11g2283 756 Pfam Arginine methyltransferase oligomerization subdomain 636 706 - -
Lac11g2283 756 FunFam Protein arginine N-methyltransferase 1.6 571 738 - -
Lac11g2283 756 PIRSF Arg_N-mtase 46 699 IPR014644 GO:0006479(InterPro)|GO:0008168(InterPro)
Lac11g2283 756 FunFam Protein arginine N-methyltransferase 1.6 227 408 - -
Lac11g2283 756 Gene3D - 227 404 - -
Lac11g2283 756 FunFam Protein arginine N-methyltransferase 79 226 - -
Lac11g2283 756 Gene3D - 571 738 - -
Lac11g2283 756 Gene3D Vaccinia Virus protein VP39 79 226 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2283 K11438 - - csv:101204902 1324.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2283 Lac-Chr11:38904508 Lac9g0317 Lac-Chr9:5112307 1.80E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g537 . . . . . . . Bma14g00044 . . . Cma15g01123 . Car15g01028 . . . . . . . . . . . . . . . . . Cone8ag0397 Cone12ag0382 . . . Csa05g00421 Chy09g01088 . Blo03g00418 . Bda07g00034 . . Bpe11g00269 . . . . Cmo15g01183 . . . . . Cpe13g00233 Bhi12g00454 . . Lac11g2283 . . . Cla01g00397 Cam01g0415 Cec01g0406 Cco01g0427 Clacu01g0416 Cmu01g0397 Cre09g2115 Lsi09g00423 . . Cme09g01617
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004964 2 7 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40