Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2284 ATGGCTTTCTTCATTAACTCATTTTTCTTCATTTCCATAATTTCCACTTTCTTTCTTCTTCTATTGACCTCTCCCCCCGCCGCCGCCGCCACCGAGCACCGCCGTCACAAGTGGGTCGGACCGACCGGCCACCGTCTTATCAAAGTGGACGTTAACGGCTCCGGCGAGTTCCTCTCCGTCCAAGCCGCCGTCGATGCAGTCCCCGATTGCAACACCGTCAACACCCTCATCCGAATCGGCCCTGGATATTACGTGGAGAAGGTGGTGGTTCCGGCGACGAAGCCGTACATAACATTTGAAGGAGCGGGAAAAGAGAGGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTTCGTACTTACAGAACAGCCTCTGTCACAGTTTTTGCCAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACAGCACCGGCGCCGATGCCGGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGCATTTCCGGCGACAAAGCGTACTTTTCGGGCTGTGGATTCTACGGCGCACAAGATACGCTGTGTGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATCGAAGGTTCCATTGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGCGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTACGAGAAGACCGGGTTCGCTTTCGTCCGGTGCAAAGTGACCGGCTCAGGTCCCCTGTACGTGGGCCGGGCCATGGGCCAGTACTCTAGAATCGTCTACGCGTATACTTACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAATGCTGGGGCCCAGGAGCAAGTAAAGTAAAGGGAGTGTCATGGGCCAGGGAGTTGGAATTTGAAGAGGCCCATCCATTTCTTGTGAAGAGCTTTGTCAATGGCAGGCACTGGATTGCACCCTCTGACGCTTAA 1047 54.35 MAFFINSFFFISIISTFFLLLLTSPPAAAATEHRRHKWVGPTGHRLIKVDVNGSGEFLSVQAAVDAVPDCNTVNTLIRIGPGYYVEKVVVPATKPYITFEGAGKERTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPYEKTGFAFVRCKVTGSGPLYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEFEEAHPFLVKSFVNGRHWIAPSDA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38916533 38921912 + Lag0032922.1 Lac11g2284 588142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2284 348 Pfam Pectinesterase 49 339 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac11g2284 348 FunFam Pectinesterase 42 345 - -
Lac11g2284 348 SUPERFAMILY Pectin lyase-like 44 345 IPR011050 -
Lac11g2284 348 Gene3D - 44 347 IPR012334 -
Lac11g2284 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 344 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lac11g2284 348 ProSitePatterns Pectinesterase signature 2. 201 210 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2284 Lac-Chr11:38916533 Lac2g1495 Lac-Chr2:12937640 6.80E-81 dispersed
Lac11g2284 Lac-Chr11:38916533 Lac11g1717 Lac-Chr11:31201364 2.20E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2284 - - - 0.0