Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2287 ATGAAGATTGGAGCGATGGAAAATGTGGTGGTAATTGGAGGATTGATTGCGGTGCAGTTCGTCTACGCCGGAAACTCGGTATTACTGAGTTATTTGATGTCGTTAGGGCTCAGTCCTCTCACGGTTGTCATTTGTATTTCTTCTGCCACTTTTCTTTTTCTGTCTCCTCTCGCTGTTTGTTTTGAAAGGAACAGTTGGCCCAAGAAATTGAGTTTCAAGTTGCTGCTTCAGCTTGTTCTGATCTCCTTTGGCGGGGTAACTCTGTTCCAAACTCTGCAATTAGAAGGGATAAAGCTGACTTCTCCAGCCATGTCATCTGCCATGCCAAACCTTGCTCCTGGTCTCATCTTTATCATTGCCTGGTGTTTTAGATTAGAGAGAGTCAAACTTAGTTGTCTGTTCAGCAAAGTTAAGATTTTAGGGACATTGCTTTGTGTAGTAGGTGCTATCACAATGAGCATTCTGCAGAGCACCGTCACGATTCCGGCAAAGGAGCAGCTAACATCTTCACCTCTAACTGTACTCTTCAATAAGGAAAAGATTCTTGGTTGTTTGTATCTCATGGTGGCGGTCTTCATATTATCAAGTAATGTTGTATTGCAGGCTACAGCACTTGGTGAACTACCAGCTCCAATGTCGTTGAGTGCTGCAACGTCGTTCATTGGAGTGCTCACGACCGCAGCTGTACGACTGATGCAAAATCATAAGTTAGAAACCGATTGGTCGAATGTCAACATTAAGAATTTACTCTGCTACTCTCTATTGGGAGGAATAGTGAGTGGCATAAGCTTGAGCTTCAATGGATGGGCAATGAAGAAAAGAGGGCCAGTTTTGGTGTCAATTTTCAGTCCCATTGGAACAGTTTTCTCTGTCATTCTCTCTGTCTCCACCTTAGGAGACACTATTTCCATTGGAAGCCTTGCTGGTATGTTCTTGATGTTCTGTGGGCTCTACTTTGTGCTTTGGGCAAAAGGAAAAGAAGGTTACTGTGATGGGAATGGCTATCACAGTGATGACTTTGATATTGAGAAACCTTTACTCTCTTGA 1047 43.27 MKIGAMENVVVIGGLIAVQFVYAGNSVLLSYLMSLGLSPLTVVICISSATFLFLSPLAVCFERNSWPKKLSFKLLLQLVLISFGGVTLFQTLQLEGIKLTSPAMSSAMPNLAPGLIFIIAWCFRLERVKLSCLFSKVKILGTLLCVVGAITMSILQSTVTIPAKEQLTSSPLTVLFNKEKILGCLYLMVAVFILSSNVVLQATALGELPAPMSLSAATSFIGVLTTAAVRLMQNHKLETDWSNVNIKNLLCYSLLGGIVSGISLSFNGWAMKKRGPVLVSIFSPIGTVFSVILSVSTLGDTISIGSLAGMFLMFCGLYFVLWAKGKEGYCDGNGYHSDDFDIEKPLLS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38947001 38950634 - Lag0032925.1 Lac11g2287 588145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2287 348 Pfam EamA-like transporter family 182 321 IPR000620 GO:0016020(InterPro)
Lac11g2287 348 Pfam EamA-like transporter family 15 153 IPR000620 GO:0016020(InterPro)
Lac11g2287 348 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 153 - -
Lac11g2287 348 PANTHER WAT1-RELATED PROTEIN 16 328 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac11g2287 348 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2287 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2287 Lac-Chr11:38947001 Lac8g2482 Lac-Chr8:42723977 1.40E-30 dispersed
Lac11g2287 Lac-Chr11:38947001 Lac5g0392 Lac-Chr5:4123821 9.10E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g2304 . 1 760 Nodulin-like Gene Family AT4G19180 61.1 6.4e-254 874.4
Lac2g0965 . 163 423 Nodulin-like Gene Family AT3G45870 71.3 9.0e-100 360.9
Lac8g2609 . 1 367 Nodulin-like Gene Family AT3G28050 59.1 8.7e-119 424.5
Lac5g0392 . 1 328 Nodulin-like Gene Family AT5G47470 60.5 6.7e-106 381.7
Lac11g2287 . 1 331 Nodulin-like Gene Family AT5G47470 58.7 5.7e-97 352.1
Lac8g2609 . 1 329 Nodulin-like Gene Family AT5G40230 55.0 5.5e-97 352.1
Lac8g2609 . 1 329 Nodulin-like Gene Family AT5G40240 53.2 1.5e-94 344.0
Lac6g0461 . 16 280 Nodulin-like Gene Family AT3G53210 57.7 2.0e-85 313.2
Lac2g0178 . 17 272 Nodulin-like Gene Family AT3G53210 60.9 1.0e-84 310.8
Lac1g2062 . 100 333 Nodulin-like Gene Family AT2G37450 65.8 2.1e-82 303.1
Lac13g0965 . 98 331 Nodulin-like Gene Family AT2G37450 54.7 3.5e-69 259.2
Lac13g0964 . 98 331 Nodulin-like Gene Family AT2G37450 55.1 6.6e-68 255.0
Lac13g0963 . 98 331 Nodulin-like Gene Family AT2G37450 53.8 8.0e-66 248.1
Lac8g1859 . 101 345 Nodulin-like Gene Family AT2G37450 53.2 3.4e-64 242.7
Lac2g0909 . 104 337 Nodulin-like Gene Family AT2G37450 54.2 7.5e-64 241.5
Lac8g2486 . 99 331 Nodulin-like Gene Family AT2G37450 51.3 6.6e-60 228.4
Lac8g2485 . 99 331 Nodulin-like Gene Family AT2G37450 51.1 3.3e-59 226.1
Lac13g0972 . 235 440 Nodulin-like Gene Family AT2G37450 53.4 6.1e-58 221.9
Lac1g2062 . 13 333 Nodulin-like Gene Family AT2G37460 71.0 4.9e-125 445.3
Lac13g0964 . 11 374 Nodulin-like Gene Family AT2G37460 53.8 4.8e-104 375.6
Lac13g0965 . 11 331 Nodulin-like Gene Family AT2G37460 57.6 2.9e-101 366.3
Lac13g0963 . 11 373 Nodulin-like Gene Family AT2G37460 51.9 6.7e-98 355.1
Lac2g0909 . 14 337 Nodulin-like Gene Family AT2G37460 53.8 1.8e-95 347.1
Lac8g2486 . 9 331 Nodulin-like Gene Family AT2G37460 55.1 8.5e-93 338.2
Lac8g2482 . 10 343 Nodulin-like Gene Family AT2G37460 50.6 5.1e-90 328.9
Lac8g2485 . 3 331 Nodulin-like Gene Family AT2G37460 52.1 3.3e-89 326.2
Lac1g1566 . 13 340 Nodulin-like Gene Family AT2G37460 51.1 1.3e-88 324.3
Lac10g2273 . 12 342 Nodulin-like Gene Family AT2G37460 52.6 3.7e-88 322.8
Lac8g1859 . 12 350 Nodulin-like Gene Family AT2G37460 51.3 1.4e-87 320.9
Lac6g2427 . 4 333 Nodulin-like Gene Family AT4G28040 50.8 2.8e-85 313.2
Lac6g2423 . 4 160 Nodulin-like Gene Family AT4G28040 51.3 8.1e-37 152.1
Lac2g0178 . 1 386 Nodulin-like Gene Family AT1G75500 77.1 1.0e-165 580.5
Lac6g0461 . 1 331 Nodulin-like Gene Family AT1G75500 74.9 3.5e-142 502.3
Lac3g0449 . 9 344 Nodulin-like Gene Family AT1G75500 60.2 1.4e-114 410.6
Lac13g0224 . 1 343 Nodulin-like Gene Family AT1G60050 51.9 2.1e-91 333.6
Lac1g2062 . 13 333 Nodulin-like Gene Family AT5G13670 51.7 2.5e-89 326.6
Lac13g0964 . 12 369 Nodulin-like Gene Family AT2G39510 60.4 1.1e-121 434.1
Lac13g0965 . 8 341 Nodulin-like Gene Family AT2G39510 61.8 7.0e-116 414.8
Lac13g0963 . 12 368 Nodulin-like Gene Family AT2G39510 57.1 2.9e-114 409.5
Lac1g2062 . 14 347 Nodulin-like Gene Family AT2G39510 59.6 5.5e-113 405.2
Lac8g2485 . 8 345 Nodulin-like Gene Family AT2G39510 60.1 8.3e-109 391.3
Lac8g2482 . 12 343 Nodulin-like Gene Family AT2G39510 55.7 1.8e-108 390.2
Lac8g2486 . 12 345 Nodulin-like Gene Family AT2G39510 59.2 7.0e-108 388.3
Lac2g0909 . 18 336 Nodulin-like Gene Family AT2G39510 56.9 1.3e-98 357.5
Lac8g1859 . 11 367 Nodulin-like Gene Family AT2G39510 51.4 2.4e-92 336.7
Lac10g2273 . 16 360 Nodulin-like Gene Family AT2G39510 50.9 3.5e-91 332.8
Lac13g0802 . 13 352 Nodulin-like Gene Family AT2G39510 50.4 7.8e-91 331.6
Lac3g1496 . 103 229 Nodulin-like Gene Family AT2G39510 63.8 1.1e-39 161.8
Lac8g1860 . 4 257 Nodulin-like Gene Family AT4G08290 64.3 9.4e-89 324.3
Lac2g0909 . 14 264 Nodulin-like Gene Family AT4G08290 54.5 2.2e-74 276.6
Lac2g0909 . 12 364 Nodulin-like Gene Family AT4G08300 65.2 6.3e-125 444.9
Lac8g1859 . 11 355 Nodulin-like Gene Family AT4G08300 57.5 1.9e-105 380.2
Lac9g0310 . 3 257 Nodulin-like Gene Family AT5G64700 63.0 3.3e-80 295.8
Lac1g2414 . 1 236 Nodulin-like Gene Family AT5G64700 52.3 6.5e-60 228.4
Lac6g2427 . 1 369 Nodulin-like Gene Family AT4G30420 54.2 1.4e-106 384.0
Lac6g2421 . 23 387 Nodulin-like Gene Family AT4G30420 52.3 5.0e-101 365.5
Lac6g2424 . 1 330 Nodulin-like Gene Family AT4G30420 53.6 1.7e-96 350.5
Lac6g2423 . 1 160 Nodulin-like Gene Family AT4G30420 56.2 8.1e-43 172.2
Lac13g0802 . 6 404 Nodulin-like Gene Family AT5G07050 65.4 2.7e-142 502.7
Lac10g2273 . 10 391 Nodulin-like Gene Family AT5G07050 60.7 1.6e-126 450.3
Lac1g1566 . 10 338 Nodulin-like Gene Family AT5G07050 65.8 7.5e-124 441.4
Lac2g0909 . 18 337 Nodulin-like Gene Family AT5G07050 51.5 4.0e-93 339.3
Lac1g1566 . 13 345 Nodulin-like Gene Family AT3G56620 58.9 1.9e-105 380.2
Lac10g2273 . 12 354 Nodulin-like Gene Family AT3G56620 54.0 6.4e-101 365.2
Lac13g0802 . 14 347 Nodulin-like Gene Family AT3G56620 55.5 2.3e-98 356.7
Lac13g0224 . 1 349 Nodulin-like Gene Family AT1G70260 53.9 1.4e-100 364.0
Lac3g3041 . 3 331 Nodulin-like Gene Family AT1G09380 60.3 1.4e-108 390.6
Lac6g2512 . 2 349 Nodulin-like Gene Family AT1G09380 54.2 5.9e-107 385.2
Lac1g1566 . 13 338 Nodulin-like Gene Family AT2G40900 63.2 6.7e-109 391.7
Lac10g2273 . 12 354 Nodulin-like Gene Family AT2G40900 56.2 1.1e-106 384.4
Lac13g0802 . 14 336 Nodulin-like Gene Family AT2G40900 57.3 5.1e-101 365.5
Lac3g0449 . 1 362 Nodulin-like Gene Family AT3G18200 68.4 5.7e-129 458.4
Lac2g0178 . 17 352 Nodulin-like Gene Family AT3G18200 58.3 2.0e-110 396.7
Lac6g0461 . 16 360 Nodulin-like Gene Family AT3G18200 52.4 1.8e-95 347.1
Lac2g0909 . 12 355 Nodulin-like Gene Family AT1G44800 64.7 7.6e-123 438.0
Lac8g1859 . 11 353 Nodulin-like Gene Family AT1G44800 56.6 1.6e-104 377.1
Lac2g0965 . 247 517 Nodulin-like Gene Family AT5G45370 66.9 4.7e-101 365.2
Lac2g0909 . 12 314 Nodulin-like Gene Family AT1G21890 66.0 3.2e-115 412.5
Lac8g1859 . 10 314 Nodulin-like Gene Family AT1G21890 58.2 5.2e-97 352.1
Lac10g2273 . 15 318 Nodulin-like Gene Family AT1G21890 51.6 6.6e-84 308.5
Lac13g0802 . 17 316 Nodulin-like Gene Family AT1G21890 50.5 2.8e-82 303.1
Lac1g2062 . 12 314 Nodulin-like Gene Family AT1G21890 50.6 6.2e-82 302.0
Lac11g0629 . 1 583 Nodulin-like Gene Family AT1G80530 58.0 8.1e-185 644.4
Lac5g2282 . 1 414 Nodulin-like Gene Family AT4G19450 67.7 1.8e-152 536.6
Lac12g1938 . 22 420 Nodulin-like Gene Family AT4G19450 55.1 1.8e-120 430.3
Lac3g0646 . 1 578 Nodulin-like Gene Family AT1G74780 56.0 6.3e-179 624.8
Lac3g0647 . 6 518 Nodulin-like Gene Family AT1G74780 58.8 1.7e-171 600.1
Lac3g0648 . 6 521 Nodulin-like Gene Family AT1G74780 56.9 6.2e-166 581.6
Lac9g1811 . 9 585 Nodulin-like Gene Family AT4G34950 65.1 3.0e-211 732.3
Lac4g1330 . 60 422 Nodulin-like Gene Family AT4G34950 65.1 7.5e-138 488.4
Lac4g1331 . 3 147 Nodulin-like Gene Family AT4G34950 75.9 1.5e-61 235.0
Lac8g2982 . 6 523 Nodulin-like Gene Family AT5G14120 72.7 4.7e-220 761.5
Lac9g1811 . 1 387 Nodulin-like Gene Family AT2G16660 73.9 9.1e-151 530.8
Lac4g1330 . 54 422 Nodulin-like Gene Family AT2G16660 68.3 2.3e-141 499.6
Lac13g0676 . 1 588 Nodulin-like Gene Family AT2G39210 68.6 1.1e-230 797.0
Lac13g0675 . 1 588 Nodulin-like Gene Family AT2G39210 64.8 9.9e-221 763.8
Lac8g2375 . 31 606 Nodulin-like Gene Family AT2G39210 62.8 5.8e-205 711.4
Lac13g0673 . 3 566 Nodulin-like Gene Family AT2G39210 61.8 1.2e-202 703.7
Lac10g2988 . 1 574 Nodulin-like Gene Family AT2G39210 60.7 6.9e-198 688.0
Lac1g2190 . 71 624 Nodulin-like Gene Family AT2G39210 58.2 2.3e-185 646.4
Lac7g2474 . 25 563 Nodulin-like Gene Family AT2G39210 57.9 4.1e-182 635.6
Lac8g0682 . 9 535 Nodulin-like Gene Family AT2G39210 52.8 4.8e-159 558.9
Lac7g2498 . 17 571 Nodulin-like Gene Family AT2G39210 51.6 5.7e-152 535.4
Lac9g0513 . 2 180 Nodulin-like Gene Family AT2G39210 68.2 3.2e-70 263.8
Lac10g1494 . 1 217 Nodulin-like Gene Family AT2G39210 53.8 1.4e-65 248.4
Lac5g2282 . 6 562 Nodulin-like Gene Family AT3G01630 52.8 3.3e-149 526.2
Lac8g2982 . 6 429 Nodulin-like Gene Family AT3G01930 70.1 2.9e-169 592.4
Lac3g0646 . 7 578 Nodulin-like Gene Family AT1G18940 51.9 1.7e-163 573.5
Lac3g0647 . 1 518 Nodulin-like Gene Family AT1G18940 53.9 2.9e-160 562.8
Lac3g0648 . 1 516 Nodulin-like Gene Family AT1G18940 53.4 1.1e-156 550.8
Lac3g0646 . 4 575 Nodulin-like Gene Family AT2G34350 53.6 2.3e-157 553.1
Lac3g0647 . 7 520 Nodulin-like Gene Family AT2G34350 54.6 7.0e-154 541.6
Lac3g0648 . 7 521 Nodulin-like Gene Family AT2G34350 53.9 1.9e-151 533.5
Lac7g2474 . 19 566 Nodulin-like Gene Family AT2G28120 69.9 1.0e-219 760.4
Lac13g0676 . 23 573 Nodulin-like Gene Family AT2G28120 63.3 1.9e-197 686.4
Lac13g0675 . 23 573 Nodulin-like Gene Family AT2G28120 60.3 1.3e-190 663.7
Lac10g2988 . 16 570 Nodulin-like Gene Family AT2G28120 60.1 3.4e-186 649.0
Lac8g2375 . 29 586 Nodulin-like Gene Family AT2G28120 59.9 1.7e-182 636.7
Lac13g0673 . 14 569 Nodulin-like Gene Family AT2G28120 56.8 7.1e-176 614.8
Lac7g2498 . 16 575 Nodulin-like Gene Family AT2G28120 55.5 1.5e-173 607.1
Lac1g2190 . 67 633 Nodulin-like Gene Family AT2G28120 56.5 4.3e-173 605.5
Lac7g2476 . 7 567 Nodulin-like Gene Family AT2G28120 54.1 4.6e-167 585.5
Lac8g0682 . 4 544 Nodulin-like Gene Family AT2G28120 53.4 1.3e-161 567.4
Lac7g2497 . 28 569 Nodulin-like Gene Family AT2G28120 52.5 2.5e-152 536.6
Lac7g2487 . 1 533 Nodulin-like Gene Family AT2G28120 51.2 2.7e-151 533.1
Lac9g0513 . 1 180 Nodulin-like Gene Family AT2G28120 67.8 1.7e-65 248.1
Lac10g1494 . 12 213 Nodulin-like Gene Family AT2G28120 51.3 2.6e-53 207.6
Lac5g2282 . 1 567 Nodulin-like Gene Family AT1G31470 57.1 3.2e-168 589.3
Lac12g1938 . 10 567 Nodulin-like Gene Family AT1G31470 54.1 1.5e-157 553.9
Lac2g1700 . 18 206 Nodulin-like Gene Family AT1G76800 77.8 7.3e-72 267.7
Lac8g1684 . 18 216 Nodulin-like Gene Family AT1G76800 67.8 3.0e-65 245.7
Lac2g1700 . 25 206 Nodulin-like Gene Family AT3G25190 65.3 3.0e-58 222.6
Lac8g1684 . 24 216 Nodulin-like Gene Family AT3G25190 59.6 2.6e-54 209.5
Lac2g1700 . 5 206 Nodulin-like Gene Family AT1G21140 72.3 1.3e-73 273.5
Lac8g1684 . 21 216 Nodulin-like Gene Family AT1G21140 71.9 6.5e-68 254.6
Lac2g1700 . 9 203 Nodulin-like Gene Family AT3G43630 75.5 5.1e-73 271.6
Lac8g1684 . 21 213 Nodulin-like Gene Family AT3G43630 71.5 1.2e-66 250.4
Lac2g1700 . 7 206 Nodulin-like Gene Family AT3G43660 72.5 3.9e-73 271.9
Lac8g1684 . 1 216 Nodulin-like Gene Family AT3G43660 65.3 4.6e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002593 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 1 1 3 2 0 57