Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2291 | ATGGTGAAGTTGGCCGTTGGCTCCGCCGCCGACTCGTTCAGTGCTGCCTCTCTCAAAGCCTATCTCGCCGAGTTCATCGCCACTCTTCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTATGGTAAGTTGACGGCCGATGCAGCACTGGATCCACCGGGGCTGGTGGCCGTGGCTGTGGCTCATGCATTCGCACTCTTCGTCGGTGTGTCGATGGCGGCGAACATCTCCGGCGGGCACCTGAACCCGGCGGTGACCTTCGGGTTGGCGATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGCTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGACTGGGAGCAGTTGAAGGCGTAGTGTTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGATCCCAAAAAGGGCTCTCTTGGGACCATCGCGCCAATTGCTATTGGGTTCATTGTCGGAGCCAACATCCTGGCGGCCGGCCCATTTAGCGGTGGCTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTGGCCGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATTTATGGCGACGTCTTTATTGGCTCTTATGCCTCTGTTCCAGTCTCTGCTGATTATGCTTAA | 753 | 58.57 | MVKLAVGSAADSFSAASLKAYLAEFIATLLFVFAGVGSAIAYGKLTADAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAVEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSADYA | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 38983589 | 38985747 | + | Lag0032929.1 | Lac11g2291 | 588149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2291 | 250 | FunFam | Probable aquaporin TIP1-1 | 2 | 249 | - | - | |
Lac11g2291 | 250 | NCBIfam | MIP family channel protein | 23 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 178 | 200 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 100 | 119 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 145 | 163 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 215 | 235 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | PRINTS | Major intrinsic protein family signature | 63 | 87 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | Pfam | Major intrinsic protein | 14 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | SUPERFAMILY | Aquaporin-like | 16 | 240 | IPR023271 | - | |
Lac11g2291 | 250 | PANTHER | AQUAPORIN-8 | 3 | 238 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Lac11g2291 | 250 | CDD | MIP | 19 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g2291 | 250 | ProSitePatterns | MIP family signature. | 81 | 89 | IPR022357 | - | |
Lac11g2291 | 250 | Gene3D | Glycerol uptake facilitator protein. | 2 | 246 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1646 | Lac-Chr11:29522738 | Lac11g2291 | Lac-Chr11:38983589 | 3.10E-54 | dispersed | |
Lac11g2291 | Lac-Chr11:38983589 | Lac1g2185 | Lac-Chr1:43310071 | 4.60E-79 | dispersed | |
Lac11g2291 | Lac-Chr11:38983589 | Lac4g2901 | Lac-Chr4:47447596 | 3.10E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2291 | K09873 | - | csv:101203925 | 454.521 |