Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2291 ATGGTGAAGTTGGCCGTTGGCTCCGCCGCCGACTCGTTCAGTGCTGCCTCTCTCAAAGCCTATCTCGCCGAGTTCATCGCCACTCTTCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTATGGTAAGTTGACGGCCGATGCAGCACTGGATCCACCGGGGCTGGTGGCCGTGGCTGTGGCTCATGCATTCGCACTCTTCGTCGGTGTGTCGATGGCGGCGAACATCTCCGGCGGGCACCTGAACCCGGCGGTGACCTTCGGGTTGGCGATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGCTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGACTGGGAGCAGTTGAAGGCGTAGTGTTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGATCCCAAAAAGGGCTCTCTTGGGACCATCGCGCCAATTGCTATTGGGTTCATTGTCGGAGCCAACATCCTGGCGGCCGGCCCATTTAGCGGTGGCTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTGGCCGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATTTATGGCGACGTCTTTATTGGCTCTTATGCCTCTGTTCCAGTCTCTGCTGATTATGCTTAA 753 58.57 MVKLAVGSAADSFSAASLKAYLAEFIATLLFVFAGVGSAIAYGKLTADAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAVEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSADYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 38983589 38985747 + Lag0032929.1 Lac11g2291 588149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2291 250 FunFam Probable aquaporin TIP1-1 2 249 - -
Lac11g2291 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Lac11g2291 250 PANTHER AQUAPORIN-8 3 238 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac11g2291 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g2291 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lac11g2291 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1646 Lac-Chr11:29522738 Lac11g2291 Lac-Chr11:38983589 3.10E-54 dispersed
Lac11g2291 Lac-Chr11:38983589 Lac1g2185 Lac-Chr1:43310071 4.60E-79 dispersed
Lac11g2291 Lac-Chr11:38983589 Lac4g2901 Lac-Chr4:47447596 3.10E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2291 K09873 - csv:101203925 454.521