Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2326 ATGTACCAGAGCACTAAAACAGAGTCGGAATTTGCTTTTCTTGAGCCAATTCGCCGCCACTTGTTGGGCGAATCGGAGGTTTCCGCCGCCGCCGGTGCCGCCGTTCCCGGCGGCAGACCCACTCCCGTTTTCACCCGGACTGGTAGTTTCAGTAGCTTGATTCCATGTCTTGATGACAATTGGGGCGATTTGCCTCTCAAGGTGGACGACTCTGAAGATATGCTGCTCGCCGCCGTTCTCCGGGATGCCGTCGGTGCCGGGTGGGTTCCGTCGCTCAATCCATCGGCGTTTGGAAGTTGCGATTTTGAATTTGCGGCGGTGAAGTCGGAGCCGGAGGTGCTTCCGGTGAGTTTCCCGCCGGTGCTACCGAATGTGGCGGTGAAGCCGGTGGTGGTACCGGAGAAGGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGGGATCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCGGCTCTAGCTTATGATCGAGCGGCCTACCGAATGCGAGGCTCGAGGGCGCTGCTCAATTTCCCCCTCCGAATCAACTCCGGCGAGCCCGAACCGGTTCGAGTCACGTCGAAGCGATCCTCGCCGGAGCTTTCATCTTCACCAAAGCGGCGGAAGAAGGTTAGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTCAGCCACTGCTAA 774 58.14 MYQSTKTESEFAFLEPIRRHLLGESEVSAAAGAAVPGGRPTPVFTRTGSFSSLIPCLDDNWGDLPLKVDDSEDMLLAAVLRDAVGAGWVPSLNPSAFGSCDFEFAAVKSEPEVLPVSFPPVLPNVAVKPVVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRSSPELSSSPKRRKKVSSAVEGGGVQVEQQVASFTHGGQLFVSHC 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39301862 39302635 + Lag0032964.1 Lac11g2326 588184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2326 257 Pfam AP2 domain 138 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 MobiDBLite consensus disorder prediction 204 234 - -
Lac11g2326 257 CDD AP2 137 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677(InterPro)
Lac11g2326 257 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g2326 257 FunFam Ethylene-responsive transcription factor 2 137 197 - -
Lac11g2326 257 PANTHER DNA-BINDING DOMAIN 119 226 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac11g2326 257 SMART rav1_2 138 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2326 Lac-Chr11:39301862 Lac5g2761 Lac-Chr5:45999553 1.10E-43 dispersed
Lac7g0041 Lac-Chr7:397835 Lac11g2326 Lac-Chr11:39301862 5.30E-23 transposed
Lac11g2326 Lac-Chr11:39301862 Lac5g0363 Lac-Chr5:3761186 1.90E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22961 PF00847 AP2 9.60E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2326 K09286 - csv:101221583 385.185