Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g2326 | ATGTACCAGAGCACTAAAACAGAGTCGGAATTTGCTTTTCTTGAGCCAATTCGCCGCCACTTGTTGGGCGAATCGGAGGTTTCCGCCGCCGCCGGTGCCGCCGTTCCCGGCGGCAGACCCACTCCCGTTTTCACCCGGACTGGTAGTTTCAGTAGCTTGATTCCATGTCTTGATGACAATTGGGGCGATTTGCCTCTCAAGGTGGACGACTCTGAAGATATGCTGCTCGCCGCCGTTCTCCGGGATGCCGTCGGTGCCGGGTGGGTTCCGTCGCTCAATCCATCGGCGTTTGGAAGTTGCGATTTTGAATTTGCGGCGGTGAAGTCGGAGCCGGAGGTGCTTCCGGTGAGTTTCCCGCCGGTGCTACCGAATGTGGCGGTGAAGCCGGTGGTGGTACCGGAGAAGGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGGGATCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCGGCTCTAGCTTATGATCGAGCGGCCTACCGAATGCGAGGCTCGAGGGCGCTGCTCAATTTCCCCCTCCGAATCAACTCCGGCGAGCCCGAACCGGTTCGAGTCACGTCGAAGCGATCCTCGCCGGAGCTTTCATCTTCACCAAAGCGGCGGAAGAAGGTTAGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTCAGCCACTGCTAA | 774 | 58.14 | MYQSTKTESEFAFLEPIRRHLLGESEVSAAAGAAVPGGRPTPVFTRTGSFSSLIPCLDDNWGDLPLKVDDSEDMLLAAVLRDAVGAGWVPSLNPSAFGSCDFEFAAVKSEPEVLPVSFPPVLPNVAVKPVVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRSSPELSSSPKRRKKVSSAVEGGGVQVEQQVASFTHGGQLFVSHC | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 39301862 | 39302635 | + | Lag0032964.1 | Lac11g2326 | 588184 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g2326 | 257 | Pfam | AP2 domain | 138 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | MobiDBLite | consensus disorder prediction | 204 | 234 | - | - | |
Lac11g2326 | 257 | CDD | AP2 | 137 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | SUPERFAMILY | DNA-binding domain | 138 | 198 | IPR016177 | GO:0003677(InterPro) | |
Lac11g2326 | 257 | Gene3D | AP2/ERF domain | 137 | 199 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | PRINTS | Ethylene responsive element binding protein signature | 139 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | PRINTS | Ethylene responsive element binding protein signature | 162 | 178 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g2326 | 257 | FunFam | Ethylene-responsive transcription factor 2 | 137 | 197 | - | - | |
Lac11g2326 | 257 | PANTHER | DNA-BINDING DOMAIN | 119 | 226 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Lac11g2326 | 257 | SMART | rav1_2 | 138 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2326 | Lac-Chr11:39301862 | Lac5g2761 | Lac-Chr5:45999553 | 1.10E-43 | dispersed | |
Lac7g0041 | Lac-Chr7:397835 | Lac11g2326 | Lac-Chr11:39301862 | 5.30E-23 | transposed | |
Lac11g2326 | Lac-Chr11:39301862 | Lac5g0363 | Lac-Chr5:3761186 | 1.90E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22961 | PF00847 | AP2 | 9.60E-15 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g2326 | K09286 | - | csv:101221583 | 385.185 |