Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2336 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTCTGGCGTAATGGGCCTCCCGACAAACCGGTATTATGCAATGCATGTGGATCCCGATGGAGGACAAAGGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCCGGATCGGCCATTTCTAATCCTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGTGTGAATCGTCCAAAACAATCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATTTTGCATGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCCGAGGACGATCTCCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAACAAACAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCAACTGTTCTTGTATGTAGTGACAACAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGGACAAATTAAACGGGACGATTCTCATTACGAAAGTTTACAAATTCTCGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAATGACATTATAAACTTCGGCGAGTTTGCGAAACAACTAACAAATGAAGAACAGCAGCAATTAATGAAGTATCTACCACAGGTTGATATCACTGAACTTCCTGAGACCCTCAAGAGCATGTTTGAGAGCCCCTATTTCAGGGAGAATGTAACTTCCTTCCAACAACTGCTAAGGGAGGGCGTTTTCGATTTCTCCTTCCTTGGGACGAAGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTATTATATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCAGCAATTGACGAAATGTAAAAATGGTAGCAAAGGATCGTTTCTTCCCAATGCCAACGCCTCGGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCCTGCTTTAGTCCTAGAAGCTTATTTGCCTTGCCTCCTGATGGTAGCTCCCTCATGCTTGAATCTCTACAATTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTCGATGTGCGGTCAAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCGGGTGGTAGGCAGGCGAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCAACACTAA 1626 43.91 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVNRPKQSPVEKLTKDLYSILHEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSDNKGMNFPTSRIGKMKNPSGSGVQQGQIKRDDSHYESLQILGNHNSPLCDVDINDIINFGEFAKQLTNEEQQQLMKYLPQVDITELPETLKSMFESPYFRENVTSFQQLLREGVFDFSFLGTKIEDCKTLKRLVLYNSSKSKWVERYQQLTKCKNGSKGSFLPNANASVSSNFMNVKRLRESYNQNIPEAKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVQH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39402707 39408625 + Lag0032974.1 Lac11g2336 588194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2336 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Gene3D - 293 384 IPR038108 -
Lac11g2336 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 410 IPR044867 -
Lac11g2336 541 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac11g2336 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Lac11g2336 541 FunFam GATA transcription factor 27 3 85 - -
Lac11g2336 541 MobiDBLite consensus disorder prediction 517 541 - -
Lac11g2336 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Lac11g2336 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Pfam Asx homology domain 286 369 IPR028020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2336 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2336 Lac-Chr11:39402707 Lac5g0347 Lac-Chr5:3595423 2.10E-193 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1069 . 81 371 C2C2-Gata Transcription Factor Family AT5G25830 53.1 1.1e-69 261.2
Lac5g2072 . 42 315 C2C2-Gata Transcription Factor Family AT3G51080 51.1 1.3e-54 211.1
Lac1g2978 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 51.4 5.2e-40 162.2
Lac5g0347 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 54.0 1.9e-135 480.3
Lac11g2336 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.4 7.1e-135 478.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22962 PF13919 ASXH 1.10E-09 No_clan Lac TF