Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2336 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTCTGGCGTAATGGGCCTCCCGACAAACCGGTATTATGCAATGCATGTGGATCCCGATGGAGGACAAAGGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCCGGATCGGCCATTTCTAATCCTGAGAGCTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGTGTGAATCGTCCAAAACAATCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATTTTGCATGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCCGAGGACGATCTCCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAACAAACAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCAACTGTTCTTGTATGTAGTGACAACAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGGACAAATTAAACGGGACGATTCTCATTACGAAAGTTTACAAATTCTCGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAATGACATTATAAACTTCGGCGAGTTTGCGAAACAACTAACAAATGAAGAACAGCAGCAATTAATGAAGTATCTACCACAGGTTGATATCACTGAACTTCCTGAGACCCTCAAGAGCATGTTTGAGAGCCCCTATTTCAGGGAGAATGTAACTTCCTTCCAACAACTGCTAAGGGAGGGCGTTTTCGATTTCTCCTTCCTTGGGACGAAGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTATTATATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCAGCAATTGACGAAATGTAAAAATGGTAGCAAAGGATCGTTTCTTCCCAATGCCAACGCCTCGGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCCTGCTTTAGTCCTAGAAGCTTATTTGCCTTGCCTCCTGATGGTAGCTCCCTCATGCTTGAATCTCTACAATTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTCGATGTGCGGTCAAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCGGGTGGTAGGCAGGCGAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCAACACTAA 1626 43.91 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVNRPKQSPVEKLTKDLYSILHEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSDNKGMNFPTSRIGKMKNPSGSGVQQGQIKRDDSHYESLQILGNHNSPLCDVDINDIINFGEFAKQLTNEEQQQLMKYLPQVDITELPETLKSMFESPYFRENVTSFQQLLREGVFDFSFLGTKIEDCKTLKRLVLYNSSKSKWVERYQQLTKCKNGSKGSFLPNANASVSSNFMNVKRLRESYNQNIPEAKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVQH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39402707 39408625 + Lag0032974.1 Lac11g2336 588194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2336 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Gene3D - 293 384 IPR038108 -
Lac11g2336 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 410 IPR044867 -
Lac11g2336 541 Gene3D - 4 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac11g2336 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Lac11g2336 541 FunFam GATA transcription factor 27 3 85 - -
Lac11g2336 541 MobiDBLite consensus disorder prediction 517 541 - -
Lac11g2336 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Lac11g2336 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g2336 541 Pfam Asx homology domain 286 369 IPR028020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2336 Lac-Chr11:39402707 Lac5g0347 Lac-Chr5:3595423 2.10E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22962 PF13919 ASXH 1.10E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2336 - - - 0.0