Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g2337 ATGGAGCTCTCAGTTAAATGTGGCTTTTTTGGTTGCCTGTTGGTTGTGCTCTTGCCTGTGCTTTGCTCCTCTCAAGACAATTTTGTCTACTCTAGAGCCACTTATTATGGCAGTCCTGATTGCTATGGAACCCCATCTGGAGCTTGTGGATTTGGTGAATTTGGAAGGACTGTCAACGATGGCAATGTTGCTGCAGTTTCCTACCTATACAGAAATGGTTCTGGCTGTGGTGCATGTTATCAGGTTAGGTGCACCAATCCAACATATTGTAGTGAAAATGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGAGATTACACTGACTTTATCTTGAGCCCACGAGCCTATGCAAAATTGGCACATCCAAACACAGCCCTACAATTGTTCTCTTATGGTGTGGTTGATGTAGAATTCAGAAGGGTTTCTTGCCAATACCCTAATTACAACACTGTCAAATTCAAGGTCCAAGAGCATAGTAGATACCCCGACTACTTGGCCATTGTCATCATCTATGTCGCTGGCAAAAACGACATCACCGCTGTTGAATTGTGGCAGGAGGATTGCAAAGAGTGGAAGGGAATGAGGAGATCCCACGGAGCTGTTTGGGACATGGCAAACCCACCTAAAGGAGACATACAGCTGAGGTTCCAAGTGAGTGGAAGCGTGGGATATGGAAGGTGGGTGGTGGCAAGCAATGCCCTCCCAAGTTATTGGAAGGCAGGAGTTGCTTATGACACAGACATTCACCTCTATTAA 759 45.98 MELSVKCGFFGCLLVVLLPVLCSSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPTYCSENGAYVVVTDHGEGDYTDFILSPRAYAKLAHPNTALQLFSYGVVDVEFRRVSCQYPNYNTVKFKVQEHSRYPDYLAIVIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKGDIQLRFQVSGSVGYGRWVVASNALPSYWKAGVAYDTDIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39417728 39419536 - Lag0032975.1 Lac11g2337 588195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g2337 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Lac11g2337 252 PANTHER EXPANSIN-B3 12 250 - -
Lac11g2337 252 Gene3D - 145 248 IPR036749 -
Lac11g2337 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Lac11g2337 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576(InterPro)
Lac11g2337 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lac11g2337 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Lac11g2337 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Lac11g2337 252 Gene3D - 20 144 IPR036908 -
Lac11g2337 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Lac11g2337 252 Pfam Expansin C-terminal domain 152 236 IPR007117 -
Lac11g2337 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Lac11g2337 252 Pfam Lytic transglycolase 66 138 IPR009009 -
Lac11g2337 252 CDD DPBB_EXLB_N 29 144 - -
Lac11g2337 252 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2337 Lac-Chr11:39417728 Lac4g1170 Lac-Chr4:28616948 1.20E-47 dispersed
Lac11g2337 Lac-Chr11:39417728 Lac4g1153 Lac-Chr4:28377501 5.00E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g2337 - - - 0.0